miRNA display CGI


Results 81 - 99 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29599 3' -51.2 NC_006151.1 + 123036 0.66 0.986333
Target:  5'- gGCGUGGGCGG--ACCUGccggCcGCGGCg -3'
miRNA:   3'- -CGCACCUGCUcgUGGACua--GuUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 123284 0.74 0.741377
Target:  5'- uCGUGGACGAGCGCgaGAcgggcugcuUCGACGcGCa -3'
miRNA:   3'- cGCACCUGCUCGUGgaCU---------AGUUGU-UG- -5'
29599 3' -51.2 NC_006151.1 + 123951 0.7 0.903757
Target:  5'- cGCccgGGACGGGCGCCaccccCAACGACg -3'
miRNA:   3'- -CGca-CCUGCUCGUGGacua-GUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 124391 0.69 0.951956
Target:  5'- uGCGUcuccaaGGcCGAGUACgUGcgCAACAACc -3'
miRNA:   3'- -CGCA------CCuGCUCGUGgACuaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 124937 0.67 0.978171
Target:  5'- cGCG-GGcccUGGGCGCCUccuucGUCAGCGACg -3'
miRNA:   3'- -CGCaCCu--GCUCGUGGAc----UAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 125259 0.66 0.987949
Target:  5'- gGCGgGGAcgccCGAGcCGCCggccGUCAACGGCa -3'
miRNA:   3'- -CGCaCCU----GCUC-GUGGac--UAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 128220 0.68 0.96687
Target:  5'- gGCGUGcGACGAGCucgugggcGCCaGGUCGcCGAUc -3'
miRNA:   3'- -CGCAC-CUGCUCG--------UGGaCUAGUuGUUG- -5'
29599 3' -51.2 NC_006151.1 + 128367 0.7 0.927742
Target:  5'- cGCGUGGugGuGCACgaaGGUCAcgagguccACGGCg -3'
miRNA:   3'- -CGCACCugCuCGUGga-CUAGU--------UGUUG- -5'
29599 3' -51.2 NC_006151.1 + 129468 0.68 0.966543
Target:  5'- gGCG-GGACGAGCccguCCaGGUCcucggagGGCAGCg -3'
miRNA:   3'- -CGCaCCUGCUCGu---GGaCUAG-------UUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 129796 0.66 0.985288
Target:  5'- gGCGUGGGCccgcaugaggcccguGAGCGCg-GAgcgcgCGGCGGCg -3'
miRNA:   3'- -CGCACCUG---------------CUCGUGgaCUa----GUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 130051 0.7 0.903757
Target:  5'- cGCGUGGugcaucGCGAGCAC--GGUCAGCGu- -3'
miRNA:   3'- -CGCACC------UGCUCGUGgaCUAGUUGUug -5'
29599 3' -51.2 NC_006151.1 + 131650 0.68 0.963496
Target:  5'- -gGUGGuCGGGCGCCgcaGAUcCGACcGCg -3'
miRNA:   3'- cgCACCuGCUCGUGGa--CUA-GUUGuUG- -5'
29599 3' -51.2 NC_006151.1 + 134214 0.7 0.903757
Target:  5'- cGCGgGGGCGGucGCACCaccaacggGAUCGugGACg -3'
miRNA:   3'- -CGCaCCUGCU--CGUGGa-------CUAGUugUUG- -5'
29599 3' -51.2 NC_006151.1 + 135763 0.66 0.991921
Target:  5'- cGCGUgGGACG-GCGCCgGGcUgGACGAg -3'
miRNA:   3'- -CGCA-CCUGCuCGUGGaCU-AgUUGUUg -5'
29599 3' -51.2 NC_006151.1 + 136452 0.66 0.990733
Target:  5'- aCGUcGACGAGCGCgUGcgCGcCGACc -3'
miRNA:   3'- cGCAcCUGCUCGUGgACuaGUuGUUG- -5'
29599 3' -51.2 NC_006151.1 + 136594 0.72 0.835548
Target:  5'- cGCGcGGcuccGCGAGCACCUGGacgccgUCAACGucACg -3'
miRNA:   3'- -CGCaCC----UGCUCGUGGACU------AGUUGU--UG- -5'
29599 3' -51.2 NC_006151.1 + 139194 0.68 0.959889
Target:  5'- gGCGgucgGGGCgcugGAGCuCCUGG-CGGCGACg -3'
miRNA:   3'- -CGCa---CCUG----CUCGuGGACUaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 139566 0.66 0.990733
Target:  5'- gGCGcccGGuccGCGAGCGCCUGGgcUCGcgcccccccgaGCGGCg -3'
miRNA:   3'- -CGCa--CC---UGCUCGUGGACU--AGU-----------UGUUG- -5'
29599 3' -51.2 NC_006151.1 + 141538 0.66 0.989412
Target:  5'- aCGUGaGCGAGCugCUGcgCGAgAGg -3'
miRNA:   3'- cGCACcUGCUCGugGACuaGUUgUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.