Results 41 - 60 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29599 | 3' | -51.2 | NC_006151.1 | + | 101223 | 0.69 | 0.943033 |
Target: 5'- gGCGUGGACGgggcccggcgggGGCAUgUGcgccAUCAGCGAg -3' miRNA: 3'- -CGCACCUGC------------UCGUGgAC----UAGUUGUUg -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 101195 | 0.74 | 0.761357 |
Target: 5'- cCGUGGACGcGUGCCUGcgCGAgGGCc -3' miRNA: 3'- cGCACCUGCuCGUGGACuaGUUgUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 100604 | 0.67 | 0.974868 |
Target: 5'- cCGUGGAgCGcuuccuggcgcgcuGGgACCUGGUCAGCGccGCg -3' miRNA: 3'- cGCACCU-GC--------------UCgUGGACUAGUUGU--UG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 100361 | 0.72 | 0.852283 |
Target: 5'- uCGUGGACGccgugGGCGCCUuccgcgccgaGGUCAACAcGCa -3' miRNA: 3'- cGCACCUGC-----UCGUGGA----------CUAGUUGU-UG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 100243 | 0.67 | 0.972946 |
Target: 5'- cGCGUGGuggcgcuCGAGCGCCUcuUCAccuGCcGCu -3' miRNA: 3'- -CGCACCu------GCUCGUGGAcuAGU---UGuUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 99913 | 0.67 | 0.975399 |
Target: 5'- aCGUGGGCGcgcgacuacGGCGCCgGccucauccccaacGUCAGCGGCu -3' miRNA: 3'- cGCACCUGC---------UCGUGGaC-------------UAGUUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 98410 | 0.69 | 0.938192 |
Target: 5'- aCGUcGaGACGGGCACCUGcgaGGCGGCc -3' miRNA: 3'- cGCA-C-CUGCUCGUGGACuagUUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 97607 | 0.67 | 0.982611 |
Target: 5'- cGCG-GGcACGuGCACCUGcg-AGCGGCg -3' miRNA: 3'- -CGCaCC-UGCuCGUGGACuagUUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 97488 | 0.68 | 0.970018 |
Target: 5'- aCGUGGACGcgcAGCGCCUcg-CGGCggUg -3' miRNA: 3'- cGCACCUGC---UCGUGGAcuaGUUGuuG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 96628 | 0.67 | 0.982611 |
Target: 5'- cCGaGGGCGcgcAGCGCCUcGAgcUCGGCGGCg -3' miRNA: 3'- cGCaCCUGC---UCGUGGA-CU--AGUUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 92750 | 0.75 | 0.668747 |
Target: 5'- gGCGcGGcACGGGCACCUGAgcgugCuGCGGCg -3' miRNA: 3'- -CGCaCC-UGCUCGUGGACUa----GuUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 89247 | 0.74 | 0.720985 |
Target: 5'- gGCGUcGuGuCGAGCGCCgucgUGGUCGACGGCg -3' miRNA: 3'- -CGCA-C-CuGCUCGUGG----ACUAGUUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 86236 | 0.67 | 0.982611 |
Target: 5'- cGCGcUGcGACaucGGCGCCgugcuggccgUGGUCGACGACg -3' miRNA: 3'- -CGC-AC-CUGc--UCGUGG----------ACUAGUUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 85776 | 0.67 | 0.978171 |
Target: 5'- gGCGcUGGACGcGCACUcGAUCcGCGcgcGCg -3' miRNA: 3'- -CGC-ACCUGCuCGUGGaCUAGuUGU---UG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 85723 | 0.73 | 0.790377 |
Target: 5'- cGCGcGGACGAGCGCacgGAgcUCAcGCAGCu -3' miRNA: 3'- -CGCaCCUGCUCGUGga-CU--AGU-UGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 85645 | 0.68 | 0.959889 |
Target: 5'- aGCGgGGACGcGCccGCCUcGcgCAGCGGCg -3' miRNA: 3'- -CGCaCCUGCuCG--UGGA-CuaGUUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 85568 | 0.7 | 0.916262 |
Target: 5'- aCGUGuACGGGgacCGCCUGcgCAACAACu -3' miRNA: 3'- cGCACcUGCUC---GUGGACuaGUUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 85372 | 0.7 | 0.910137 |
Target: 5'- cGCGUGGuccccggcgcgaACGucGGCGCCaacgaGGUCGACGGCg -3' miRNA: 3'- -CGCACC------------UGC--UCGUGGa----CUAGUUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 84682 | 0.69 | 0.938192 |
Target: 5'- -gGUGGACGAGCAgCUG--CGGCcGCu -3' miRNA: 3'- cgCACCUGCUCGUgGACuaGUUGuUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 78677 | 0.66 | 0.988552 |
Target: 5'- gGUGcUGGACGGGCucuacgccggccgggGCCUcGUCGccGCGACg -3' miRNA: 3'- -CGC-ACCUGCUCG---------------UGGAcUAGU--UGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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