Results 21 - 40 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29599 | 3' | -51.2 | NC_006151.1 | + | 51392 | 0.66 | 0.986333 |
Target: 5'- cGCGgcccgGGGCGAGCGC---GUC-GCAGCg -3' miRNA: 3'- -CGCa----CCUGCUCGUGgacUAGuUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 64218 | 0.66 | 0.986333 |
Target: 5'- gGCGUGGGCGccucggcguacAGgGCCg---CGACGGCg -3' miRNA: 3'- -CGCACCUGC-----------UCgUGGacuaGUUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 141538 | 0.66 | 0.989412 |
Target: 5'- aCGUGaGCGAGCugCUGcgCGAgAGg -3' miRNA: 3'- cGCACcUGCUCGugGACuaGUUgUUg -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 61186 | 0.66 | 0.990733 |
Target: 5'- -aGUGGcCGccAGCGCCgcgGAgagccauuUCAGCAGCg -3' miRNA: 3'- cgCACCuGC--UCGUGGa--CU--------AGUUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 139566 | 0.66 | 0.990733 |
Target: 5'- gGCGcccGGuccGCGAGCGCCUGGgcUCGcgcccccccgaGCGGCg -3' miRNA: 3'- -CGCa--CC---UGCUCGUGGACU--AGU-----------UGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 6150 | 0.66 | 0.990733 |
Target: 5'- cGCGaGGACG-GCGgCCUcGGccUCGGCGGCg -3' miRNA: 3'- -CGCaCCUGCuCGU-GGA-CU--AGUUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 136452 | 0.66 | 0.990733 |
Target: 5'- aCGUcGACGAGCGCgUGcgCGcCGACc -3' miRNA: 3'- cGCAcCUGCUCGUGgACuaGUuGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 24769 | 0.66 | 0.991921 |
Target: 5'- ---cGGGCGAGCAUCUGuuUCAugcGCAugACg -3' miRNA: 3'- cgcaCCUGCUCGUGGACu-AGU---UGU--UG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 76068 | 0.66 | 0.991921 |
Target: 5'- aGCGUGaa-GGGCGCCag--CAGCGACa -3' miRNA: 3'- -CGCACcugCUCGUGGacuaGUUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 122330 | 0.66 | 0.991921 |
Target: 5'- cGCGUGGAcccCGAGgACgUGGcCAAgAACc -3' miRNA: 3'- -CGCACCU---GCUCgUGgACUaGUUgUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 106621 | 0.66 | 0.989412 |
Target: 5'- cGCGUacgacgccgcGGucacCGAGCGCCUGGaCGccGCGGCg -3' miRNA: 3'- -CGCA----------CCu---GCUCGUGGACUaGU--UGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 49904 | 0.66 | 0.989412 |
Target: 5'- cCGUGGACGAGC-UCgGGcgcCGGCGGCu -3' miRNA: 3'- cGCACCUGCUCGuGGaCUa--GUUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 20723 | 0.66 | 0.986333 |
Target: 5'- gGCG-GGGcCGGGCGCgaGAcgAACAGCa -3' miRNA: 3'- -CGCaCCU-GCUCGUGgaCUagUUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 123036 | 0.66 | 0.986333 |
Target: 5'- gGCGUGGGCGG--ACCUGccggCcGCGGCg -3' miRNA: 3'- -CGCACCUGCUcgUGGACua--GuUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 63585 | 0.66 | 0.986998 |
Target: 5'- gGCGUGGcgcggguucgcgaacACGGGCACCc--UCAGCGcGCg -3' miRNA: 3'- -CGCACC---------------UGCUCGUGGacuAGUUGU-UG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 53106 | 0.66 | 0.987949 |
Target: 5'- aGCG-GGAggccguacuCGAGCGCCU--UCAugAGCu -3' miRNA: 3'- -CGCaCCU---------GCUCGUGGAcuAGUugUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 102946 | 0.66 | 0.987949 |
Target: 5'- cGCGcUGGACGcGGCGCCcGccgcccaCGACGGCg -3' miRNA: 3'- -CGC-ACCUGC-UCGUGGaCua-----GUUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 114320 | 0.66 | 0.987949 |
Target: 5'- uGCGc-GACGGGgGCCUGcgCGACGugcGCg -3' miRNA: 3'- -CGCacCUGCUCgUGGACuaGUUGU---UG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 125259 | 0.66 | 0.987949 |
Target: 5'- gGCGgGGAcgccCGAGcCGCCggccGUCAACGGCa -3' miRNA: 3'- -CGCaCCU----GCUC-GUGGac--UAGUUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 78677 | 0.66 | 0.988552 |
Target: 5'- gGUGcUGGACGGGCucuacgccggccgggGCCUcGUCGccGCGACg -3' miRNA: 3'- -CGC-ACCUGCUCG---------------UGGAcUAGU--UGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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