miRNA display CGI


Results 41 - 60 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29599 3' -51.2 NC_006151.1 + 6150 0.66 0.990733
Target:  5'- cGCGaGGACG-GCGgCCUcGGccUCGGCGGCg -3'
miRNA:   3'- -CGCaCCUGCuCGU-GGA-CU--AGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 136452 0.66 0.990733
Target:  5'- aCGUcGACGAGCGCgUGcgCGcCGACc -3'
miRNA:   3'- cGCAcCUGCUCGUGgACuaGUuGUUG- -5'
29599 3' -51.2 NC_006151.1 + 24769 0.66 0.991921
Target:  5'- ---cGGGCGAGCAUCUGuuUCAugcGCAugACg -3'
miRNA:   3'- cgcaCCUGCUCGUGGACu-AGU---UGU--UG- -5'
29599 3' -51.2 NC_006151.1 + 76068 0.66 0.991921
Target:  5'- aGCGUGaa-GGGCGCCag--CAGCGACa -3'
miRNA:   3'- -CGCACcugCUCGUGGacuaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 122330 0.66 0.991921
Target:  5'- cGCGUGGAcccCGAGgACgUGGcCAAgAACc -3'
miRNA:   3'- -CGCACCU---GCUCgUGgACUaGUUgUUG- -5'
29599 3' -51.2 NC_006151.1 + 102946 0.66 0.987949
Target:  5'- cGCGcUGGACGcGGCGCCcGccgcccaCGACGGCg -3'
miRNA:   3'- -CGC-ACCUGC-UCGUGGaCua-----GUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 53106 0.66 0.987949
Target:  5'- aGCG-GGAggccguacuCGAGCGCCU--UCAugAGCu -3'
miRNA:   3'- -CGCaCCU---------GCUCGUGGAcuAGUugUUG- -5'
29599 3' -51.2 NC_006151.1 + 86236 0.67 0.982611
Target:  5'- cGCGcUGcGACaucGGCGCCgugcuggccgUGGUCGACGACg -3'
miRNA:   3'- -CGC-AC-CUGc--UCGUGG----------ACUAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 26329 0.67 0.982611
Target:  5'- cGCG-GGGCGAGgccCGCCUcacgGggCGGCGGCg -3'
miRNA:   3'- -CGCaCCUGCUC---GUGGA----CuaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 96628 0.67 0.982611
Target:  5'- cCGaGGGCGcgcAGCGCCUcGAgcUCGGCGGCg -3'
miRNA:   3'- cGCaCCUGC---UCGUGGA-CU--AGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 97607 0.67 0.982611
Target:  5'- cGCG-GGcACGuGCACCUGcg-AGCGGCg -3'
miRNA:   3'- -CGCaCC-UGCuCGUGGACuagUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 64966 0.66 0.984557
Target:  5'- gGCGcaGGcCGAGCGCCacGUCcAGCAGCa -3'
miRNA:   3'- -CGCa-CCuGCUCGUGGacUAG-UUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 68047 0.66 0.984557
Target:  5'- gGCGcGG-CGGGCACggGcUCGGCGACg -3'
miRNA:   3'- -CGCaCCuGCUCGUGgaCuAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 113378 0.66 0.984557
Target:  5'- cGCac-GGCGAGUGCCUGcUCuGCAACa -3'
miRNA:   3'- -CGcacCUGCUCGUGGACuAGuUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 129796 0.66 0.985288
Target:  5'- gGCGUGGGCccgcaugaggcccguGAGCGCg-GAgcgcgCGGCGGCg -3'
miRNA:   3'- -CGCACCUG---------------CUCGUGgaCUa----GUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 51392 0.66 0.986333
Target:  5'- cGCGgcccgGGGCGAGCGC---GUC-GCAGCg -3'
miRNA:   3'- -CGCa----CCUGCUCGUGgacUAGuUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 64218 0.66 0.986333
Target:  5'- gGCGUGGGCGccucggcguacAGgGCCg---CGACGGCg -3'
miRNA:   3'- -CGCACCUGC-----------UCgUGGacuaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 20723 0.66 0.986333
Target:  5'- gGCG-GGGcCGGGCGCgaGAcgAACAGCa -3'
miRNA:   3'- -CGCaCCU-GCUCGUGgaCUagUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 123036 0.66 0.986333
Target:  5'- gGCGUGGGCGG--ACCUGccggCcGCGGCg -3'
miRNA:   3'- -CGCACCUGCUcgUGGACua--GuUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 63585 0.66 0.986998
Target:  5'- gGCGUGGcgcggguucgcgaacACGGGCACCc--UCAGCGcGCg -3'
miRNA:   3'- -CGCACC---------------UGCUCGUGGacuAGUUGU-UG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.