miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29599 3' -51.2 NC_006151.1 + 123036 0.66 0.986333
Target:  5'- gGCGUGGGCGG--ACCUGccggCcGCGGCg -3'
miRNA:   3'- -CGCACCUGCUcgUGGACua--GuUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 129796 0.66 0.985288
Target:  5'- gGCGUGGGCccgcaugaggcccguGAGCGCg-GAgcgcgCGGCGGCg -3'
miRNA:   3'- -CGCACCUG---------------CUCGUGgaCUa----GUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 113378 0.66 0.984557
Target:  5'- cGCac-GGCGAGUGCCUGcUCuGCAACa -3'
miRNA:   3'- -CGcacCUGCUCGUGGACuAGuUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 68047 0.66 0.984557
Target:  5'- gGCGcGG-CGGGCACggGcUCGGCGACg -3'
miRNA:   3'- -CGCaCCuGCUCGUGgaCuAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 64966 0.66 0.984557
Target:  5'- gGCGcaGGcCGAGCGCCacGUCcAGCAGCa -3'
miRNA:   3'- -CGCa-CCuGCUCGUGGacUAG-UUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 5854 0.67 0.982611
Target:  5'- uGCGgagggGGACGAGCGCCcgGGgccgcCGGgGGCc -3'
miRNA:   3'- -CGCa----CCUGCUCGUGGa-CUa----GUUgUUG- -5'
29599 3' -51.2 NC_006151.1 + 76113 0.67 0.982611
Target:  5'- ---aGGACGcgcAGCAUCUGGUCGGCcguGCc -3'
miRNA:   3'- cgcaCCUGC---UCGUGGACUAGUUGu--UG- -5'
29599 3' -51.2 NC_006151.1 + 86236 0.67 0.982611
Target:  5'- cGCGcUGcGACaucGGCGCCgugcuggccgUGGUCGACGACg -3'
miRNA:   3'- -CGC-AC-CUGc--UCGUGG----------ACUAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 26329 0.67 0.982611
Target:  5'- cGCG-GGGCGAGgccCGCCUcacgGggCGGCGGCg -3'
miRNA:   3'- -CGCaCCUGCUC---GUGGA----CuaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 96628 0.67 0.982611
Target:  5'- cCGaGGGCGcgcAGCGCCUcGAgcUCGGCGGCg -3'
miRNA:   3'- cGCaCCUGC---UCGUGGA-CU--AGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 97607 0.67 0.982611
Target:  5'- cGCG-GGcACGuGCACCUGcg-AGCGGCg -3'
miRNA:   3'- -CGCaCC-UGCuCGUGGACuagUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 102682 0.67 0.980485
Target:  5'- cCGUGGACGcgggGGCGCCcgGcgCgGGCGGCg -3'
miRNA:   3'- cGCACCUGC----UCGUGGa-CuaG-UUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 20158 0.67 0.980485
Target:  5'- cGCGUGGAccgcCGGGCcgcGCCcgGGUC-GCGGCc -3'
miRNA:   3'- -CGCACCU----GCUCG---UGGa-CUAGuUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 30836 0.67 0.978171
Target:  5'- uGCGUGGGCGgagaggAGCGaggaggaCUGG-CGGCGGCg -3'
miRNA:   3'- -CGCACCUGC------UCGUg------GACUaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 85776 0.67 0.978171
Target:  5'- gGCGcUGGACGcGCACUcGAUCcGCGcgcGCg -3'
miRNA:   3'- -CGC-ACCUGCuCGUGGaCUAGuUGU---UG- -5'
29599 3' -51.2 NC_006151.1 + 124937 0.67 0.978171
Target:  5'- cGCG-GGcccUGGGCGCCUccuucGUCAGCGACg -3'
miRNA:   3'- -CGCaCCu--GCUCGUGGAc----UAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 120349 0.67 0.975661
Target:  5'- cGCGUGGccgggcucGCGGGCGCCUac-CAGCGc- -3'
miRNA:   3'- -CGCACC--------UGCUCGUGGAcuaGUUGUug -5'
29599 3' -51.2 NC_006151.1 + 20102 0.67 0.975661
Target:  5'- gGCugggGGACGGGCGCCc---CGGCGACg -3'
miRNA:   3'- -CGca--CCUGCUCGUGGacuaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 99913 0.67 0.975399
Target:  5'- aCGUGGGCGcgcgacuacGGCGCCgGccucauccccaacGUCAGCGGCu -3'
miRNA:   3'- cGCACCUGC---------UCGUGGaC-------------UAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 48403 0.67 0.975399
Target:  5'- cUGUGGGCGucgGGCaccgccuACCUGGUCAACc-- -3'
miRNA:   3'- cGCACCUGC---UCG-------UGGACUAGUUGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.