Results 121 - 140 of 316 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 128479 | 0.67 | 0.813361 |
Target: 5'- aGGGCGUCAaacaccGUCGcCGUGUGGCUCg -3' miRNA: 3'- aCCUGCGGUgc----UAGUuGCGCGUCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 136809 | 0.67 | 0.813361 |
Target: 5'- --cGCGCuCGCGGcCGACGCGCcgcgcgGGCUCu -3' miRNA: 3'- accUGCG-GUGCUaGUUGCGCG------UCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 90638 | 0.67 | 0.821186 |
Target: 5'- cGGGCGCUugGCGAUgGGCGUguacaugcgcgggGCGGCg- -3' miRNA: 3'- aCCUGCGG--UGCUAgUUGCG-------------CGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 63503 | 0.67 | 0.822047 |
Target: 5'- aGGugGCCAgGugggGGCGCGCGGggCg -3' miRNA: 3'- aCCugCGGUgCuag-UUGCGCGUCgaG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 95432 | 0.67 | 0.822047 |
Target: 5'- uUGGACGUgGCGAgggCGGCGcCGC-GCg- -3' miRNA: 3'- -ACCUGCGgUGCUa--GUUGC-GCGuCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 13108 | 0.67 | 0.822047 |
Target: 5'- aGGuCGCgGCgGGUC-ACGCGC-GCUCc -3' miRNA: 3'- aCCuGCGgUG-CUAGuUGCGCGuCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 135466 | 0.67 | 0.822047 |
Target: 5'- aGGugcGCGCCagcguguccgcGCGGgccaggCGGCGCGCGGcCUCg -3' miRNA: 3'- aCC---UGCGG-----------UGCUa-----GUUGCGCGUC-GAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 116680 | 0.67 | 0.822047 |
Target: 5'- aGGAagGUCACGAa-GGCGagcaGCAGCUCg -3' miRNA: 3'- aCCUg-CGGUGCUagUUGCg---CGUCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 100429 | 0.67 | 0.822047 |
Target: 5'- gGGGCGCUGCGcggcGUgAugGCGCAGaCg- -3' miRNA: 3'- aCCUGCGGUGC----UAgUugCGCGUC-Gag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 73261 | 0.67 | 0.822047 |
Target: 5'- cGGGCGCCagGCGGUUgccggcguuGAcCGUGCGGCg- -3' miRNA: 3'- aCCUGCGG--UGCUAG---------UU-GCGCGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 66530 | 0.67 | 0.822047 |
Target: 5'- cGcGCGCCGCGcucuUCGggggcGCGCGCGGC-Cg -3' miRNA: 3'- aCcUGCGGUGCu---AGU-----UGCGCGUCGaG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 65499 | 0.67 | 0.822047 |
Target: 5'- cGGACGCCgGCGG--AGCGCGCcucCUCc -3' miRNA: 3'- aCCUGCGG-UGCUagUUGCGCGuc-GAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 60797 | 0.67 | 0.822047 |
Target: 5'- gUGcACGCUggGcUCGcCGCGCAGCUCc -3' miRNA: 3'- -ACcUGCGGugCuAGUuGCGCGUCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 47265 | 0.68 | 0.786339 |
Target: 5'- aUGGAcCGCUccgGCGcgCAGCGUccGCGGCUg -3' miRNA: 3'- -ACCU-GCGG---UGCuaGUUGCG--CGUCGAg -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 104557 | 0.68 | 0.786339 |
Target: 5'- cUGGcCGCCcuggGCGcgCGGCGCGCGGaCg- -3' miRNA: 3'- -ACCuGCGG----UGCuaGUUGCGCGUC-Gag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 116224 | 0.68 | 0.786339 |
Target: 5'- uUGGcgagccGCGCCACGGccgagagcUCGAgGUGCGGCa- -3' miRNA: 3'- -ACC------UGCGGUGCU--------AGUUgCGCGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 59837 | 0.68 | 0.786339 |
Target: 5'- cGGcCGCCAccggcCGGUCcggGGgGCGCAGCUg -3' miRNA: 3'- aCCuGCGGU-----GCUAG---UUgCGCGUCGAg -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 122487 | 0.68 | 0.786339 |
Target: 5'- gGGACGCgGgCGAgaCGGCGCGcCGGCg- -3' miRNA: 3'- aCCUGCGgU-GCUa-GUUGCGC-GUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 132051 | 0.68 | 0.786339 |
Target: 5'- cGGcaGCGCgGCGGagAACG-GCGGCUCc -3' miRNA: 3'- aCC--UGCGgUGCUagUUGCgCGUCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 94949 | 0.68 | 0.777039 |
Target: 5'- cGGACGCgcagCGCGuccCAGCGCauCGGCUCg -3' miRNA: 3'- aCCUGCG----GUGCua-GUUGCGc-GUCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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