miRNA display CGI


Results 141 - 160 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 72111 0.68 0.767608
Target:  5'- cGGcaGCGUCAUGGggaa-GCGCAGCUCc -3'
miRNA:   3'- aCC--UGCGGUGCUaguugCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 39148 0.68 0.767608
Target:  5'- cUGGgacccGCGCCGCGG-CGGCcucucgGCGCuGCUCg -3'
miRNA:   3'- -ACC-----UGCGGUGCUaGUUG------CGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 120501 0.68 0.767608
Target:  5'- cUGGACGCUGCug-CAGCGCaacCAGCUg -3'
miRNA:   3'- -ACCUGCGGUGcuaGUUGCGc--GUCGAg -5'
29600 3' -56.5 NC_006151.1 + 69978 0.68 0.767608
Target:  5'- cGGGCGCUgcaGCGGcggCAGCGUcaGCAcGCUCu -3'
miRNA:   3'- aCCUGCGG---UGCUa--GUUGCG--CGU-CGAG- -5'
29600 3' -56.5 NC_006151.1 + 141833 0.68 0.758054
Target:  5'- cGGGgGucCCGCGcUCGACGCGaggGGCUCg -3'
miRNA:   3'- aCCUgC--GGUGCuAGUUGCGCg--UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 139080 0.68 0.758054
Target:  5'- cGGGCuccGCCugGGggcgcgCAugGCGCuGUUCa -3'
miRNA:   3'- aCCUG---CGGugCUa-----GUugCGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 103653 0.68 0.767608
Target:  5'- cGGACGCggaCACGG-CGgagaaggcggcGCGCGCGGCg- -3'
miRNA:   3'- aCCUGCG---GUGCUaGU-----------UGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 111516 0.68 0.771395
Target:  5'- cGGcAUGCgCACGAagcagcucaccgacaUCAugGCGCGCAGCg- -3'
miRNA:   3'- aCC-UGCG-GUGCU---------------AGU--UGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 132051 0.68 0.786339
Target:  5'- cGGcaGCGCgGCGGagAACG-GCGGCUCc -3'
miRNA:   3'- aCC--UGCGgUGCUagUUGCgCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 122487 0.68 0.786339
Target:  5'- gGGACGCgGgCGAgaCGGCGCGcCGGCg- -3'
miRNA:   3'- aCCUGCGgU-GCUa-GUUGCGC-GUCGag -5'
29600 3' -56.5 NC_006151.1 + 59837 0.68 0.786339
Target:  5'- cGGcCGCCAccggcCGGUCcggGGgGCGCAGCUg -3'
miRNA:   3'- aCCuGCGGU-----GCUAG---UUgCGCGUCGAg -5'
29600 3' -56.5 NC_006151.1 + 116224 0.68 0.786339
Target:  5'- uUGGcgagccGCGCCACGGccgagagcUCGAgGUGCGGCa- -3'
miRNA:   3'- -ACC------UGCGGUGCU--------AGUUgCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 104557 0.68 0.786339
Target:  5'- cUGGcCGCCcuggGCGcgCGGCGCGCGGaCg- -3'
miRNA:   3'- -ACCuGCGG----UGCuaGUUGCGCGUC-Gag -5'
29600 3' -56.5 NC_006151.1 + 47265 0.68 0.786339
Target:  5'- aUGGAcCGCUccgGCGcgCAGCGUccGCGGCUg -3'
miRNA:   3'- -ACCU-GCGG---UGCuaGUUGCG--CGUCGAg -5'
29600 3' -56.5 NC_006151.1 + 94949 0.68 0.777039
Target:  5'- cGGACGCgcagCGCGuccCAGCGCauCGGCUCg -3'
miRNA:   3'- aCCUGCG----GUGCua-GUUGCGc-GUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 93558 0.68 0.777039
Target:  5'- gGGAaagucCGCCGCGGgggCgGGCGCGCcaaagagcgGGCUCg -3'
miRNA:   3'- aCCU-----GCGGUGCUa--G-UUGCGCG---------UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 60022 0.68 0.777039
Target:  5'- -uGACGCU-CG-UCAGCGUGCAGCg- -3'
miRNA:   3'- acCUGCGGuGCuAGUUGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 54755 0.68 0.777039
Target:  5'- cGcGGCGUCACcAUCAuggacuacgaccGCGUGCAGCUg -3'
miRNA:   3'- aC-CUGCGGUGcUAGU------------UGCGCGUCGAg -5'
29600 3' -56.5 NC_006151.1 + 50006 0.68 0.777039
Target:  5'- uUGcGCGCCGCGcgCGcggccCGCGCGGCg- -3'
miRNA:   3'- -ACcUGCGGUGCuaGUu----GCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 11359 0.68 0.777039
Target:  5'- cGGGCGCUACc----GCGCGCuccGCUCg -3'
miRNA:   3'- aCCUGCGGUGcuaguUGCGCGu--CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.