Results 121 - 140 of 316 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 118148 | 0.69 | 0.698696 |
Target: 5'- -cGACGCCGCGGcgGugGCGCcGCUg -3' miRNA: 3'- acCUGCGGUGCUagUugCGCGuCGAg -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 83003 | 0.69 | 0.718807 |
Target: 5'- cGGcCGCgGCGca-GACGCGCGGCg- -3' miRNA: 3'- aCCuGCGgUGCuagUUGCGCGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 119193 | 0.69 | 0.68855 |
Target: 5'- cGGGCGCCGC---CGACGCGC-GCa- -3' miRNA: 3'- aCCUGCGGUGcuaGUUGCGCGuCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 49230 | 0.69 | 0.698696 |
Target: 5'- cGGcucccACGCCcCGcUCGGCuggGCGCGGCUCg -3' miRNA: 3'- aCC-----UGCGGuGCuAGUUG---CGCGUCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 75592 | 0.69 | 0.698696 |
Target: 5'- cGGuCGCCgACGAcgacgaggUCGGCGCGCAcGCg- -3' miRNA: 3'- aCCuGCGG-UGCU--------AGUUGCGCGU-CGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 97776 | 0.69 | 0.698696 |
Target: 5'- aUGGcGCGCagCACGGUCGcgaagcgcucagGCGCGCGGC-Cg -3' miRNA: 3'- -ACC-UGCG--GUGCUAGU------------UGCGCGUCGaG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 104055 | 0.69 | 0.698696 |
Target: 5'- cUGGGCGCgCGCGGcCGACGCgGC-GCUg -3' miRNA: 3'- -ACCUGCG-GUGCUaGUUGCG-CGuCGAg -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 125477 | 0.69 | 0.698696 |
Target: 5'- cGGccGCGCUcggccagcGCGucUCGGCGCGCAuGCUCg -3' miRNA: 3'- aCC--UGCGG--------UGCu-AGUUGCGCGU-CGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 100633 | 0.69 | 0.707778 |
Target: 5'- cUGGucagcgccgcgcuGCGCCGCGccGUCGACgaGCGCGGCg- -3' miRNA: 3'- -ACC-------------UGCGGUGC--UAGUUG--CGCGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 3142 | 0.69 | 0.68855 |
Target: 5'- gGGGCGCCcucgGCGGgcUCGGCGCagAGCUCc -3' miRNA: 3'- aCCUGCGG----UGCU--AGUUGCGcgUCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 76075 | 0.69 | 0.687533 |
Target: 5'- aGGGCGCCagcagcgacagggGCGGcgccuucuccaUCAggACGCGCAGCa- -3' miRNA: 3'- aCCUGCGG-------------UGCU-----------AGU--UGCGCGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 53062 | 0.69 | 0.728755 |
Target: 5'- cGGGCaCCACGAagcugUCGACgagGCGCAgguGCUCg -3' miRNA: 3'- aCCUGcGGUGCU-----AGUUG---CGCGU---CGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 81373 | 0.69 | 0.698696 |
Target: 5'- cGGGCGCCagcGCGAgCcGCGCcGCGGCg- -3' miRNA: 3'- aCCUGCGG---UGCUaGuUGCG-CGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 67445 | 0.69 | 0.692615 |
Target: 5'- gGGAUGgCGCGggCGggggggucgcagagcGCGCGCAGCa- -3' miRNA: 3'- aCCUGCgGUGCuaGU---------------UGCGCGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 48083 | 0.69 | 0.738619 |
Target: 5'- aGGAUacaccaGCCGCGAugucgccgcUCGugGCGguGCUg -3' miRNA: 3'- aCCUG------CGGUGCU---------AGUugCGCguCGAg -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 88420 | 0.69 | 0.735669 |
Target: 5'- gGGACGuCCGCGcgcGUCAcguucaccacggagACGCGCgugcggcgcccgAGCUCg -3' miRNA: 3'- aCCUGC-GGUGC---UAGU--------------UGCGCG------------UCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 127219 | 0.69 | 0.728755 |
Target: 5'- gGGGgGuCCGCGGggccgUCAcACGCGCcAGCUCu -3' miRNA: 3'- aCCUgC-GGUGCU-----AGU-UGCGCG-UCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 137194 | 0.69 | 0.728755 |
Target: 5'- gUGaGcCGCCACGAgguguUCAACGCcCGGCUg -3' miRNA: 3'- -AC-CuGCGGUGCU-----AGUUGCGcGUCGAg -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 3433 | 0.69 | 0.708784 |
Target: 5'- gGGACGCgGCGGaagccgccgUCGggcGCGgGguGCUCg -3' miRNA: 3'- aCCUGCGgUGCU---------AGU---UGCgCguCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 17108 | 0.69 | 0.718807 |
Target: 5'- gGGGCGCCGgGGgcucCGGCGgCGguGCUg -3' miRNA: 3'- aCCUGCGGUgCUa---GUUGC-GCguCGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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