miRNA display CGI


Results 81 - 100 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 122147 0.7 0.637289
Target:  5'- gUGGacgaguuccucGCGCgCACGAUCGGCG-GCgGGCUCg -3'
miRNA:   3'- -ACC-----------UGCG-GUGCUAGUUGCgCG-UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 137307 0.7 0.647583
Target:  5'- cGGGuucCGCCGCGcggugcUCGACGCGCucgcgcuGCUCu -3'
miRNA:   3'- aCCU---GCGGUGCu-----AGUUGCGCGu------CGAG- -5'
29600 3' -56.5 NC_006151.1 + 132130 0.7 0.647583
Target:  5'- aGGcccagcucGCGCCgGCGGUgguugaCGGCGCGCAGCUg -3'
miRNA:   3'- aCC--------UGCGG-UGCUA------GUUGCGCGUCGAg -5'
29600 3' -56.5 NC_006151.1 + 2459 0.7 0.647583
Target:  5'- gGGGCGCCgagcccccaGCGGUUGGcCGCGCGGUg- -3'
miRNA:   3'- aCCUGCGG---------UGCUAGUU-GCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 119037 0.7 0.647583
Target:  5'- cGGGCGCCaaggACGG-CGGCGCcGCGGC-Cg -3'
miRNA:   3'- aCCUGCGG----UGCUaGUUGCG-CGUCGaG- -5'
29600 3' -56.5 NC_006151.1 + 73332 0.7 0.647583
Target:  5'- gGGGCGCCGCG--CGugGCGaagaGGUUCu -3'
miRNA:   3'- aCCUGCGGUGCuaGUugCGCg---UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 89867 0.7 0.647583
Target:  5'- cGGuCGCCuCGua-GACGCGCcGCUCg -3'
miRNA:   3'- aCCuGCGGuGCuagUUGCGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 52400 0.7 0.651698
Target:  5'- cGGGCGCCGcCGcgcccgagaaGUCAaagugcuccucgggcACGCGCAGCg- -3'
miRNA:   3'- aCCUGCGGU-GC----------UAGU---------------UGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 100372 0.7 0.65581
Target:  5'- gUGGGCGCCuuccgcgccgaGGUCAACaCGCAccGCUCg -3'
miRNA:   3'- -ACCUGCGGug---------CUAGUUGcGCGU--CGAG- -5'
29600 3' -56.5 NC_006151.1 + 66868 0.7 0.657865
Target:  5'- gGGGCGgCGCGAagGGCGCGCccGGCc- -3'
miRNA:   3'- aCCUGCgGUGCUagUUGCGCG--UCGag -5'
29600 3' -56.5 NC_006151.1 + 124945 0.7 0.657865
Target:  5'- cUGGGCGCCuccuuCG-UCAGCGacgucaCGCAGCUg -3'
miRNA:   3'- -ACCUGCGGu----GCuAGUUGC------GCGUCGAg -5'
29600 3' -56.5 NC_006151.1 + 59367 0.7 0.657865
Target:  5'- gGGGCGCCGCGcggccGUCGuCGCGUccAGCa- -3'
miRNA:   3'- aCCUGCGGUGC-----UAGUuGCGCG--UCGag -5'
29600 3' -56.5 NC_006151.1 + 61246 0.7 0.657865
Target:  5'- cGGagcgcGCGCCACGAg-GACGCGgCGGCa- -3'
miRNA:   3'- aCC-----UGCGGUGCUagUUGCGC-GUCGag -5'
29600 3' -56.5 NC_006151.1 + 74761 0.7 0.667101
Target:  5'- cUGGaugcacuGCGCCACGAgccgCGcgaGCGCGCAgaaggugcGCUCg -3'
miRNA:   3'- -ACC-------UGCGGUGCUa---GU---UGCGCGU--------CGAG- -5'
29600 3' -56.5 NC_006151.1 + 81769 0.7 0.668126
Target:  5'- cGGGCGCCAcCGG--GACGCGCucGGCg- -3'
miRNA:   3'- aCCUGCGGU-GCUagUUGCGCG--UCGag -5'
29600 3' -56.5 NC_006151.1 + 122648 0.7 0.668126
Target:  5'- cUGGACGaCCugGAgCGGCGCG-AGCg- -3'
miRNA:   3'- -ACCUGC-GGugCUaGUUGCGCgUCGag -5'
29600 3' -56.5 NC_006151.1 + 121423 0.7 0.668126
Target:  5'- gGGACGUCGCGGggcuCGCGcCGGcCUCg -3'
miRNA:   3'- aCCUGCGGUGCUaguuGCGC-GUC-GAG- -5'
29600 3' -56.5 NC_006151.1 + 129545 0.7 0.668126
Target:  5'- cGGG-GCCGCcGUCAAC-CGCAGCUg -3'
miRNA:   3'- aCCUgCGGUGcUAGUUGcGCGUCGAg -5'
29600 3' -56.5 NC_006151.1 + 57091 0.7 0.668126
Target:  5'- aGGcgcacgcaGCGCCGCGAgCAGCGCGC-GC-Cg -3'
miRNA:   3'- aCC--------UGCGGUGCUaGUUGCGCGuCGaG- -5'
29600 3' -56.5 NC_006151.1 + 85395 0.7 0.668126
Target:  5'- -cGGCGCCAacgaGGUCGACGgCGCGGgCUUc -3'
miRNA:   3'- acCUGCGGUg---CUAGUUGC-GCGUC-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.