miRNA display CGI


Results 121 - 140 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 97776 0.69 0.698696
Target:  5'- aUGGcGCGCagCACGGUCGcgaagcgcucagGCGCGCGGC-Cg -3'
miRNA:   3'- -ACC-UGCG--GUGCUAGU------------UGCGCGUCGaG- -5'
29600 3' -56.5 NC_006151.1 + 118148 0.69 0.698696
Target:  5'- -cGACGCCGCGGcgGugGCGCcGCUg -3'
miRNA:   3'- acCUGCGGUGCUagUugCGCGuCGAg -5'
29600 3' -56.5 NC_006151.1 + 100633 0.69 0.707778
Target:  5'- cUGGucagcgccgcgcuGCGCCGCGccGUCGACgaGCGCGGCg- -3'
miRNA:   3'- -ACC-------------UGCGGUGC--UAGUUG--CGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 115209 0.69 0.708784
Target:  5'- cGGGCGCgcgCGCGAUCGugGcCGCuGC-Cg -3'
miRNA:   3'- aCCUGCG---GUGCUAGUugC-GCGuCGaG- -5'
29600 3' -56.5 NC_006151.1 + 138230 0.69 0.708784
Target:  5'- cGGGCGCgcgcacgaguaCGCGGgcgCGAcCGCGCAGCg- -3'
miRNA:   3'- aCCUGCG-----------GUGCUa--GUU-GCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 114377 0.69 0.708784
Target:  5'- aGGGCGCgcuCAUGAUguACGUGguGUUCc -3'
miRNA:   3'- aCCUGCG---GUGCUAguUGCGCguCGAG- -5'
29600 3' -56.5 NC_006151.1 + 11314 0.69 0.708784
Target:  5'- cGGGcCGCCGCGAUac-CGCGCgGGCg- -3'
miRNA:   3'- aCCU-GCGGUGCUAguuGCGCG-UCGag -5'
29600 3' -56.5 NC_006151.1 + 122939 0.69 0.708784
Target:  5'- cGGACGCCgACGG-CGGCGcCGCGGg-- -3'
miRNA:   3'- aCCUGCGG-UGCUaGUUGC-GCGUCgag -5'
29600 3' -56.5 NC_006151.1 + 3433 0.69 0.708784
Target:  5'- gGGACGCgGCGGaagccgccgUCGggcGCGgGguGCUCg -3'
miRNA:   3'- aCCUGCGgUGCU---------AGU---UGCgCguCGAG- -5'
29600 3' -56.5 NC_006151.1 + 104608 0.69 0.718807
Target:  5'- cGcGGCGCCGaGAUCugcCGCGC-GCUCg -3'
miRNA:   3'- aC-CUGCGGUgCUAGuu-GCGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 102399 0.69 0.718807
Target:  5'- cUGGuCGCgGCGcgCGuCGCGCGGCcCg -3'
miRNA:   3'- -ACCuGCGgUGCuaGUuGCGCGUCGaG- -5'
29600 3' -56.5 NC_006151.1 + 83003 0.69 0.718807
Target:  5'- cGGcCGCgGCGca-GACGCGCGGCg- -3'
miRNA:   3'- aCCuGCGgUGCuagUUGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 17108 0.69 0.718807
Target:  5'- gGGGCGCCGgGGgcucCGGCGgCGguGCUg -3'
miRNA:   3'- aCCUGCGGUgCUa---GUUGC-GCguCGAg -5'
29600 3' -56.5 NC_006151.1 + 98773 0.69 0.728755
Target:  5'- aGGACgGCCuGCGcuaCGugGCGCAGCa- -3'
miRNA:   3'- aCCUG-CGG-UGCua-GUugCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 127219 0.69 0.728755
Target:  5'- gGGGgGuCCGCGGggccgUCAcACGCGCcAGCUCu -3'
miRNA:   3'- aCCUgC-GGUGCU-----AGU-UGCGCG-UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 53062 0.69 0.728755
Target:  5'- cGGGCaCCACGAagcugUCGACgagGCGCAgguGCUCg -3'
miRNA:   3'- aCCUGcGGUGCU-----AGUUG---CGCGU---CGAG- -5'
29600 3' -56.5 NC_006151.1 + 137194 0.69 0.728755
Target:  5'- gUGaGcCGCCACGAgguguUCAACGCcCGGCUg -3'
miRNA:   3'- -AC-CuGCGGUGCU-----AGUUGCGcGUCGAg -5'
29600 3' -56.5 NC_006151.1 + 88420 0.69 0.735669
Target:  5'- gGGACGuCCGCGcgcGUCAcguucaccacggagACGCGCgugcggcgcccgAGCUCg -3'
miRNA:   3'- aCCUGC-GGUGC---UAGU--------------UGCGCG------------UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 7637 0.69 0.737637
Target:  5'- cGGuCGCCccacccgcgccucGCGcUCGGCGCGC-GCUCc -3'
miRNA:   3'- aCCuGCGG-------------UGCuAGUUGCGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 113066 0.69 0.738619
Target:  5'- aGGACGaCGCGuacgAGCGCGCGGCcgUCg -3'
miRNA:   3'- aCCUGCgGUGCuag-UUGCGCGUCG--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.