miRNA display CGI


Results 141 - 160 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 69765 0.69 0.738619
Target:  5'- gGGccacGCGCCGCGcgC-GCGCGUAGUUg -3'
miRNA:   3'- aCC----UGCGGUGCuaGuUGCGCGUCGAg -5'
29600 3' -56.5 NC_006151.1 + 48083 0.69 0.738619
Target:  5'- aGGAUacaccaGCCGCGAugucgccgcUCGugGCGguGCUg -3'
miRNA:   3'- aCCUG------CGGUGCU---------AGUugCGCguCGAg -5'
29600 3' -56.5 NC_006151.1 + 113066 0.69 0.738619
Target:  5'- aGGACGaCGCGuacgAGCGCGCGGCcgUCg -3'
miRNA:   3'- aCCUGCgGUGCuag-UUGCGCGUCG--AG- -5'
29600 3' -56.5 NC_006151.1 + 13948 0.69 0.738619
Target:  5'- cGGGCGCCcCGGg-GACGCGcCGGC-Ca -3'
miRNA:   3'- aCCUGCGGuGCUagUUGCGC-GUCGaG- -5'
29600 3' -56.5 NC_006151.1 + 128236 0.69 0.742538
Target:  5'- gUGGGCGCCAggucgcCGAUCaggugGuggaagcggcacugcGCGCGCAGCg- -3'
miRNA:   3'- -ACCUGCGGU------GCUAG-----U---------------UGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 68978 0.68 0.748388
Target:  5'- cGGACGCCgGCcagCAGCGCGC-GCa- -3'
miRNA:   3'- aCCUGCGG-UGcuaGUUGCGCGuCGag -5'
29600 3' -56.5 NC_006151.1 + 73374 0.68 0.748388
Target:  5'- aUGucCGUCACGGg-GGCGCGCAGCg- -3'
miRNA:   3'- -ACcuGCGGUGCUagUUGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 39244 0.68 0.748388
Target:  5'- cGGGCGCCcCGAcaucggccgccUCAACGCccagggggugcuGCuGCUCu -3'
miRNA:   3'- aCCUGCGGuGCU-----------AGUUGCG------------CGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 50607 0.68 0.748388
Target:  5'- cGGGCcccgcgccGCCGCGG-CAGCGUGCAcGcCUCg -3'
miRNA:   3'- aCCUG--------CGGUGCUaGUUGCGCGU-C-GAG- -5'
29600 3' -56.5 NC_006151.1 + 139938 0.68 0.748388
Target:  5'- gUGGGcCGCCGuccuCGAguUCGGCGCcgaGCAGUUCa -3'
miRNA:   3'- -ACCU-GCGGU----GCU--AGUUGCG---CGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 17820 0.68 0.748388
Target:  5'- cUGGGCGCgGCGG--GGCGgGCGGC-Ca -3'
miRNA:   3'- -ACCUGCGgUGCUagUUGCgCGUCGaG- -5'
29600 3' -56.5 NC_006151.1 + 102609 0.68 0.757093
Target:  5'- cGGGCGCUcgagcggGCGcgCGACGUgaGCGcGCUCg -3'
miRNA:   3'- aCCUGCGG-------UGCuaGUUGCG--CGU-CGAG- -5'
29600 3' -56.5 NC_006151.1 + 51981 0.68 0.757093
Target:  5'- cGaGGCGagcagcuCCGCGGUgcCGGCGUGCAGCUUg -3'
miRNA:   3'- aC-CUGC-------GGUGCUA--GUUGCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 69649 0.68 0.758054
Target:  5'- gUGcGGCGCCGCcgGGUCGucgaagcccccGCGCGuCAGCUg -3'
miRNA:   3'- -AC-CUGCGGUG--CUAGU-----------UGCGC-GUCGAg -5'
29600 3' -56.5 NC_006151.1 + 84492 0.68 0.758054
Target:  5'- aGGcCGCUGCGAUCc-CGgGCAGCg- -3'
miRNA:   3'- aCCuGCGGUGCUAGuuGCgCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 139080 0.68 0.758054
Target:  5'- cGGGCuccGCCugGGggcgcgCAugGCGCuGUUCa -3'
miRNA:   3'- aCCUG---CGGugCUa-----GUugCGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 141833 0.68 0.758054
Target:  5'- cGGGgGucCCGCGcUCGACGCGaggGGCUCg -3'
miRNA:   3'- aCCUgC--GGUGCuAGUUGCGCg--UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 39148 0.68 0.767608
Target:  5'- cUGGgacccGCGCCGCGG-CGGCcucucgGCGCuGCUCg -3'
miRNA:   3'- -ACC-----UGCGGUGCUaGUUG------CGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 120501 0.68 0.767608
Target:  5'- cUGGACGCUGCug-CAGCGCaacCAGCUg -3'
miRNA:   3'- -ACCUGCGGUGcuaGUUGCGc--GUCGAg -5'
29600 3' -56.5 NC_006151.1 + 69978 0.68 0.767608
Target:  5'- cGGGCGCUgcaGCGGcggCAGCGUcaGCAcGCUCu -3'
miRNA:   3'- aCCUGCGG---UGCUa--GUUGCG--CGU-CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.