miRNA display CGI


Results 121 - 140 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 53869 0.67 0.795498
Target:  5'- cGGAgccggcauUGCCGCuGAUCAguACGCggcgaaggGCAGCUCc -3'
miRNA:   3'- aCCU--------GCGGUG-CUAGU--UGCG--------CGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 51224 0.67 0.795498
Target:  5'- cGGGC-CCGCGcaggCGGCGCgagcgcucggcGCAGCUCc -3'
miRNA:   3'- aCCUGcGGUGCua--GUUGCG-----------CGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 51937 0.67 0.795498
Target:  5'- aGGAaGCCGCucuGGUCGcgcagcaccACGCGCGGCg- -3'
miRNA:   3'- aCCUgCGGUG---CUAGU---------UGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 82180 0.67 0.795498
Target:  5'- cGGGgG-CGCGAUC-AUGCGCAuccGCUCg -3'
miRNA:   3'- aCCUgCgGUGCUAGuUGCGCGU---CGAG- -5'
29600 3' -56.5 NC_006151.1 + 84461 0.67 0.795498
Target:  5'- --cGCGCCAUGGaCcGCGCGUGGUUCg -3'
miRNA:   3'- accUGCGGUGCUaGuUGCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 104157 0.67 0.795498
Target:  5'- -cGACGCCGCGGagcugCGccccgccgccgaGCGCGC-GCUCg -3'
miRNA:   3'- acCUGCGGUGCUa----GU------------UGCGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 124061 0.67 0.795498
Target:  5'- cUGGACG-CGCGGaCGgccguGCGCGCGGC-Cg -3'
miRNA:   3'- -ACCUGCgGUGCUaGU-----UGCGCGUCGaG- -5'
29600 3' -56.5 NC_006151.1 + 130017 0.67 0.795498
Target:  5'- cGGcgcGCGCCACGGccgUCGugagccaGCGCAGCg- -3'
miRNA:   3'- aCC---UGCGGUGCU---AGUug-----CGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 138924 0.67 0.795498
Target:  5'- -cGcCGCCACGGUCAuCGgcUGCAGCUa -3'
miRNA:   3'- acCuGCGGUGCUAGUuGC--GCGUCGAg -5'
29600 3' -56.5 NC_006151.1 + 121991 0.67 0.795498
Target:  5'- aUGGGCGgCGCGugccgcuUCcACGCGCGcgucgcGCUCg -3'
miRNA:   3'- -ACCUGCgGUGCu------AGuUGCGCGU------CGAG- -5'
29600 3' -56.5 NC_006151.1 + 63896 0.67 0.794589
Target:  5'- gGGGCGCUcgagcagGCGcgCGuACGCGCgcgccguggGGCUCg -3'
miRNA:   3'- aCCUGCGG-------UGCuaGU-UGCGCG---------UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 102786 0.67 0.793678
Target:  5'- gGcGACGCCuccGCGAguacuuucugcgCGGCGCGCAGUa- -3'
miRNA:   3'- aC-CUGCGG---UGCUa-----------GUUGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 70874 0.67 0.793678
Target:  5'- cGGGCGCCuccgccgacgaGAUC-GCGCGCuGCgUCg -3'
miRNA:   3'- aCCUGCGGug---------CUAGuUGCGCGuCG-AG- -5'
29600 3' -56.5 NC_006151.1 + 2746 0.68 0.79002
Target:  5'- cGGGC-CCACGAUggagcuagaguccagCAcggccGCGCGgAGCUCg -3'
miRNA:   3'- aCCUGcGGUGCUA---------------GU-----UGCGCgUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 132051 0.68 0.786339
Target:  5'- cGGcaGCGCgGCGGagAACG-GCGGCUCc -3'
miRNA:   3'- aCC--UGCGgUGCUagUUGCgCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 122487 0.68 0.786339
Target:  5'- gGGACGCgGgCGAgaCGGCGCGcCGGCg- -3'
miRNA:   3'- aCCUGCGgU-GCUa-GUUGCGC-GUCGag -5'
29600 3' -56.5 NC_006151.1 + 59837 0.68 0.786339
Target:  5'- cGGcCGCCAccggcCGGUCcggGGgGCGCAGCUg -3'
miRNA:   3'- aCCuGCGGU-----GCUAG---UUgCGCGUCGAg -5'
29600 3' -56.5 NC_006151.1 + 116224 0.68 0.786339
Target:  5'- uUGGcgagccGCGCCACGGccgagagcUCGAgGUGCGGCa- -3'
miRNA:   3'- -ACC------UGCGGUGCU--------AGUUgCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 104557 0.68 0.786339
Target:  5'- cUGGcCGCCcuggGCGcgCGGCGCGCGGaCg- -3'
miRNA:   3'- -ACCuGCGG----UGCuaGUUGCGCGUC-Gag -5'
29600 3' -56.5 NC_006151.1 + 47265 0.68 0.786339
Target:  5'- aUGGAcCGCUccgGCGcgCAGCGUccGCGGCUg -3'
miRNA:   3'- -ACCU-GCGG---UGCuaGUUGCG--CGUCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.