miRNA display CGI


Results 81 - 100 of 316 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 60022 0.68 0.777039
Target:  5'- -uGACGCU-CG-UCAGCGUGCAGCg- -3'
miRNA:   3'- acCUGCGGuGCuAGUUGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 60472 0.69 0.68855
Target:  5'- aGGGCGUgaagCGCGcgCAgaaGCGCGCcacgAGCUCg -3'
miRNA:   3'- aCCUGCG----GUGCuaGU---UGCGCG----UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 60732 0.66 0.877534
Target:  5'- aGG-UGCCggagcACGAggCAGCG-GCGGCUCg -3'
miRNA:   3'- aCCuGCGG-----UGCUa-GUUGCgCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 60797 0.67 0.822047
Target:  5'- gUGcACGCUggGcUCGcCGCGCAGCUCc -3'
miRNA:   3'- -ACcUGCGGugCuAGUuGCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 60870 0.73 0.476912
Target:  5'- aGGAC-CCGCGG-CAGcCGCGCAGCa- -3'
miRNA:   3'- aCCUGcGGUGCUaGUU-GCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 61246 0.7 0.657865
Target:  5'- cGGagcgcGCGCCACGAg-GACGCGgCGGCa- -3'
miRNA:   3'- aCC-----UGCGGUGCUagUUGCGC-GUCGag -5'
29600 3' -56.5 NC_006151.1 + 63392 0.7 0.626991
Target:  5'- cGGGCGUgACGAUCAGCagcacgggcacgGCGCAgGCg- -3'
miRNA:   3'- aCCUGCGgUGCUAGUUG------------CGCGU-CGag -5'
29600 3' -56.5 NC_006151.1 + 63503 0.67 0.822047
Target:  5'- aGGugGCCAgGugggGGCGCGCGGggCg -3'
miRNA:   3'- aCCugCGGUgCuag-UUGCGCGUCgaG- -5'
29600 3' -56.5 NC_006151.1 + 63587 0.67 0.804509
Target:  5'- cGuGGCGCggguuCGCGAacacgggcacccUCAGCGCGC-GCUCg -3'
miRNA:   3'- aC-CUGCG-----GUGCU------------AGUUGCGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 63896 0.67 0.794589
Target:  5'- gGGGCGCUcgagcagGCGcgCGuACGCGCgcgccguggGGCUCg -3'
miRNA:   3'- aCCUGCGG-------UGCuaGU-UGCGCG---------UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 64221 0.67 0.842164
Target:  5'- gUGGGCGCCucggcguacagggccGCGAcggCGGCGCGgGccacGCUCu -3'
miRNA:   3'- -ACCUGCGG---------------UGCUa--GUUGCGCgU----CGAG- -5'
29600 3' -56.5 NC_006151.1 + 64488 0.7 0.678357
Target:  5'- gGGACGcCCGCGggC-GCGgGCGGCg- -3'
miRNA:   3'- aCCUGC-GGUGCuaGuUGCgCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 64546 0.73 0.496071
Target:  5'- cGGGgGCgGCGAggccgUGGCGCGCcAGCUCg -3'
miRNA:   3'- aCCUgCGgUGCUa----GUUGCGCG-UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 64614 0.66 0.854964
Target:  5'- aGcGGCGCCGCGccgccggccgCGGgGCGCGGCg- -3'
miRNA:   3'- aC-CUGCGGUGCua--------GUUgCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 65121 0.67 0.813361
Target:  5'- aGGACGCCcgucgGCGggCucCGCGcCAGCg- -3'
miRNA:   3'- aCCUGCGG-----UGCuaGuuGCGC-GUCGag -5'
29600 3' -56.5 NC_006151.1 + 65499 0.67 0.822047
Target:  5'- cGGACGCCgGCGG--AGCGCGCcucCUCc -3'
miRNA:   3'- aCCUGCGG-UGCUagUUGCGCGuc-GAG- -5'
29600 3' -56.5 NC_006151.1 + 65699 0.7 0.668126
Target:  5'- cGGGCGCgG-GAUCAGguagggggccuCGCGCGGCUg -3'
miRNA:   3'- aCCUGCGgUgCUAGUU-----------GCGCGUCGAg -5'
29600 3' -56.5 NC_006151.1 + 65826 0.74 0.430709
Target:  5'- aUGGGCgGCCGCGc-CAGCGCGgccCGGCUCa -3'
miRNA:   3'- -ACCUG-CGGUGCuaGUUGCGC---GUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 66073 0.67 0.828023
Target:  5'- cGGACgGCCgccugggcuuccacGCGGgccugCAGCGCGCGcGCUUu -3'
miRNA:   3'- aCCUG-CGG--------------UGCUa----GUUGCGCGU-CGAG- -5'
29600 3' -56.5 NC_006151.1 + 66530 0.67 0.822047
Target:  5'- cGcGCGCCGCGcucuUCGggggcGCGCGCGGC-Cg -3'
miRNA:   3'- aCcUGCGGUGCu---AGU-----UGCGCGUCGaG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.