miRNA display CGI


Results 101 - 120 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 66571 0.66 0.884622
Target:  5'- gUGGACcCgGCGcUCGcGCGCGCGGC-Cg -3'
miRNA:   3'- -ACCUGcGgUGCuAGU-UGCGCGUCGaG- -5'
29600 3' -56.5 NC_006151.1 + 66868 0.7 0.657865
Target:  5'- gGGGCGgCGCGAagGGCGCGCccGGCc- -3'
miRNA:   3'- aCCUGCgGUGCUagUUGCGCG--UCGag -5'
29600 3' -56.5 NC_006151.1 + 67445 0.69 0.692615
Target:  5'- gGGAUGgCGCGggCGggggggucgcagagcGCGCGCAGCa- -3'
miRNA:   3'- aCCUGCgGUGCuaGU---------------UGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 67486 0.73 0.46747
Target:  5'- cGGGCacccGCaCACGA---GCGCGCGGCUCg -3'
miRNA:   3'- aCCUG----CG-GUGCUaguUGCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 67670 0.73 0.505781
Target:  5'- cGGAagagGCC-CGAgUCGcucGCGCGCAGCUCc -3'
miRNA:   3'- aCCUg---CGGuGCU-AGU---UGCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 68244 0.66 0.854964
Target:  5'- cGGGCGCguCaGGUagacGCGCGCGGCg- -3'
miRNA:   3'- aCCUGCGguG-CUAgu--UGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 68285 0.72 0.565551
Target:  5'- cGGGCGCCACGGcggccaGGCGCGC-GCcCa -3'
miRNA:   3'- aCCUGCGGUGCUag----UUGCGCGuCGaG- -5'
29600 3' -56.5 NC_006151.1 + 68547 0.66 0.884622
Target:  5'- aGGucccgcgacACGCCGacgcaGAgguACGCGUAGCUCu -3'
miRNA:   3'- aCC---------UGCGGUg----CUaguUGCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 68721 0.66 0.854964
Target:  5'- aGGAaaaCGCCGCccagCAGCGgGCcGCUCu -3'
miRNA:   3'- aCCU---GCGGUGcua-GUUGCgCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 68848 0.67 0.804509
Target:  5'- cGaGGCGCCGCG--CGACGCGUccAGCa- -3'
miRNA:   3'- aC-CUGCGGUGCuaGUUGCGCG--UCGag -5'
29600 3' -56.5 NC_006151.1 + 68920 0.7 0.626991
Target:  5'- cGGGCGgaUCGCGAacUCGaugaucuggcgcAUGCGCGGCUCg -3'
miRNA:   3'- aCCUGC--GGUGCU--AGU------------UGCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 68978 0.68 0.748388
Target:  5'- cGGACGCCgGCcagCAGCGCGC-GCa- -3'
miRNA:   3'- aCCUGCGG-UGcuaGUUGCGCGuCGag -5'
29600 3' -56.5 NC_006151.1 + 69140 0.66 0.847023
Target:  5'- aGGGCG-CGCGGgugcUCGACGCcguGCcGCUCg -3'
miRNA:   3'- aCCUGCgGUGCU----AGUUGCG---CGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 69578 0.72 0.525437
Target:  5'- gGGugccGCGCCGCGAcgagcUCGGcCGCGCGGCg- -3'
miRNA:   3'- aCC----UGCGGUGCU-----AGUU-GCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 69649 0.68 0.758054
Target:  5'- gUGcGGCGCCGCcgGGUCGucgaagcccccGCGCGuCAGCUg -3'
miRNA:   3'- -AC-CUGCGGUG--CUAGU-----------UGCGC-GUCGAg -5'
29600 3' -56.5 NC_006151.1 + 69765 0.69 0.738619
Target:  5'- gGGccacGCGCCGCGcgC-GCGCGUAGUUg -3'
miRNA:   3'- aCC----UGCGGUGCuaGuUGCGCGUCGAg -5'
29600 3' -56.5 NC_006151.1 + 69978 0.68 0.767608
Target:  5'- cGGGCGCUgcaGCGGcggCAGCGUcaGCAcGCUCu -3'
miRNA:   3'- aCCUGCGG---UGCUa--GUUGCG--CGU-CGAG- -5'
29600 3' -56.5 NC_006151.1 + 70568 0.66 0.854964
Target:  5'- aUGGACGCCgccACGcgCAccACGgccgaGCGGCUg -3'
miRNA:   3'- -ACCUGCGG---UGCuaGU--UGCg----CGUCGAg -5'
29600 3' -56.5 NC_006151.1 + 70874 0.67 0.793678
Target:  5'- cGGGCGCCuccgccgacgaGAUC-GCGCGCuGCgUCg -3'
miRNA:   3'- aCCUGCGGug---------CUAGuUGCGCGuCG-AG- -5'
29600 3' -56.5 NC_006151.1 + 71011 0.72 0.545375
Target:  5'- gUGGGCGCCAUGcgC--CGCG-AGCUCg -3'
miRNA:   3'- -ACCUGCGGUGCuaGuuGCGCgUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.