miRNA display CGI


Results 141 - 160 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 81721 0.66 0.884622
Target:  5'- gGGGCGCCGgguccucgcCGAagguccaggCGGCGCGgAGCUg -3'
miRNA:   3'- aCCUGCGGU---------GCUa--------GUUGCGCgUCGAg -5'
29600 3' -56.5 NC_006151.1 + 81769 0.7 0.668126
Target:  5'- cGGGCGCCAcCGG--GACGCGCucGGCg- -3'
miRNA:   3'- aCCUGCGGU-GCUagUUGCGCG--UCGag -5'
29600 3' -56.5 NC_006151.1 + 81860 0.67 0.813361
Target:  5'- aGGcgcGCGUCGCucUCGACGCGCAGg-- -3'
miRNA:   3'- aCC---UGCGGUGcuAGUUGCGCGUCgag -5'
29600 3' -56.5 NC_006151.1 + 82180 0.67 0.795498
Target:  5'- cGGGgG-CGCGAUC-AUGCGCAuccGCUCg -3'
miRNA:   3'- aCCUgCgGUGCUAGuUGCGCGU---CGAG- -5'
29600 3' -56.5 NC_006151.1 + 82623 0.77 0.281775
Target:  5'- cGGGCGCCGCGGUgGGCGCgggaccccccuGCGGCg- -3'
miRNA:   3'- aCCUGCGGUGCUAgUUGCG-----------CGUCGag -5'
29600 3' -56.5 NC_006151.1 + 82675 0.67 0.838885
Target:  5'- cGGcGCGCCGCGggCGAgG-GCGGCg- -3'
miRNA:   3'- aCC-UGCGGUGCuaGUUgCgCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 82715 0.67 0.795498
Target:  5'- aGGAgGcCCGCGAgggUCAggAgGCGCAGCg- -3'
miRNA:   3'- aCCUgC-GGUGCU---AGU--UgCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 83003 0.69 0.718807
Target:  5'- cGGcCGCgGCGca-GACGCGCGGCg- -3'
miRNA:   3'- aCCuGCGgUGCuagUUGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 83042 0.67 0.838885
Target:  5'- cGGugGagACGcgCAGCGgcaGCAGCUUg -3'
miRNA:   3'- aCCugCggUGCuaGUUGCg--CGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 84411 0.72 0.515571
Target:  5'- gUGGGCGCgGUGAUaaggCGGCGCGCGGCg- -3'
miRNA:   3'- -ACCUGCGgUGCUA----GUUGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 84461 0.67 0.795498
Target:  5'- --cGCGCCAUGGaCcGCGCGUGGUUCg -3'
miRNA:   3'- accUGCGGUGCUaGuUGCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 84492 0.68 0.758054
Target:  5'- aGGcCGCUGCGAUCc-CGgGCAGCg- -3'
miRNA:   3'- aCCuGCGGUGCUAGuuGCgCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 84553 0.66 0.884622
Target:  5'- cUGGGCccGCCcgggcuucaGCGAgggccUCGACGCGCGcCUCg -3'
miRNA:   3'- -ACCUG--CGG---------UGCU-----AGUUGCGCGUcGAG- -5'
29600 3' -56.5 NC_006151.1 + 84641 0.67 0.838885
Target:  5'- cUGGAcaaCGCCAUGGcCGcggGCGCGCGcCUCg -3'
miRNA:   3'- -ACCU---GCGGUGCUaGU---UGCGCGUcGAG- -5'
29600 3' -56.5 NC_006151.1 + 84907 0.69 0.698696
Target:  5'- aUGGuguACGCCGCGcgCGGCGCcgccuccgGCGuGCUCu -3'
miRNA:   3'- -ACC---UGCGGUGCuaGUUGCG--------CGU-CGAG- -5'
29600 3' -56.5 NC_006151.1 + 85395 0.7 0.668126
Target:  5'- -cGGCGCCAacgaGGUCGACGgCGCGGgCUUc -3'
miRNA:   3'- acCUGCGGUg---CUAGUUGC-GCGUC-GAG- -5'
29600 3' -56.5 NC_006151.1 + 85780 0.75 0.407744
Target:  5'- cUGGACGCgCAcuCGAUCcGCGCGCgcgugcagcgccaccAGCUCa -3'
miRNA:   3'- -ACCUGCG-GU--GCUAGuUGCGCG---------------UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 86654 0.66 0.884622
Target:  5'- gGaGGCGCuCACGc---GCGCGCuGCUCu -3'
miRNA:   3'- aC-CUGCG-GUGCuaguUGCGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 87579 0.72 0.565551
Target:  5'- cGGACGUcuccgccggCACcAUCGACGC-CAGCUCg -3'
miRNA:   3'- aCCUGCG---------GUGcUAGUUGCGcGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 88420 0.69 0.735669
Target:  5'- gGGACGuCCGCGcgcGUCAcguucaccacggagACGCGCgugcggcgcccgAGCUCg -3'
miRNA:   3'- aCCUGC-GGUGC---UAGU--------------UGCGCG------------UCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.