miRNA display CGI


Results 61 - 80 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 120787 0.66 0.870225
Target:  5'- cGGACGCgGC---CGACGCGgAGCg- -3'
miRNA:   3'- aCCUGCGgUGcuaGUUGCGCgUCGag -5'
29600 3' -56.5 NC_006151.1 + 120501 0.68 0.767608
Target:  5'- cUGGACGCUGCug-CAGCGCaacCAGCUg -3'
miRNA:   3'- -ACCUGCGGUGcuaGUUGCGc--GUCGAg -5'
29600 3' -56.5 NC_006151.1 + 120332 0.77 0.302302
Target:  5'- cGGACGCCGCGcgCGccCGCGUggccgGGCUCg -3'
miRNA:   3'- aCCUGCGGUGCuaGUu-GCGCG-----UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 119465 0.67 0.813361
Target:  5'- gUGGACGCCguGCGcuaCGugGCcgGCAGcCUCg -3'
miRNA:   3'- -ACCUGCGG--UGCua-GUugCG--CGUC-GAG- -5'
29600 3' -56.5 NC_006151.1 + 119193 0.69 0.68855
Target:  5'- cGGGCGCCGC---CGACGCGC-GCa- -3'
miRNA:   3'- aCCUGCGGUGcuaGUUGCGCGuCGag -5'
29600 3' -56.5 NC_006151.1 + 119037 0.7 0.647583
Target:  5'- cGGGCGCCaaggACGG-CGGCGCcGCGGC-Cg -3'
miRNA:   3'- aCCUGCGG----UGCUaGUUGCG-CGUCGaG- -5'
29600 3' -56.5 NC_006151.1 + 118432 0.8 0.205472
Target:  5'- cGGGCGCgGaGGUguGCGCGCGGCUCg -3'
miRNA:   3'- aCCUGCGgUgCUAguUGCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 118354 0.66 0.884622
Target:  5'- cGcGCGCCuGCGAggCGGCGCGCGcccGCUUc -3'
miRNA:   3'- aCcUGCGG-UGCUa-GUUGCGCGU---CGAG- -5'
29600 3' -56.5 NC_006151.1 + 118225 0.67 0.804509
Target:  5'- cGGGCGCC-CGGaccaccgggcUCGGCG-GCgGGCUCa -3'
miRNA:   3'- aCCUGCGGuGCU----------AGUUGCgCG-UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 118148 0.69 0.698696
Target:  5'- -cGACGCCGCGGcgGugGCGCcGCUg -3'
miRNA:   3'- acCUGCGGUGCUagUugCGCGuCGAg -5'
29600 3' -56.5 NC_006151.1 + 118099 0.72 0.512626
Target:  5'- aGGcgcuGCGCCGCGAccugcuggcgcugcUCGugGCGCGCAGCg- -3'
miRNA:   3'- aCC----UGCGGUGCU--------------AGU--UGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 118029 0.67 0.803615
Target:  5'- aUGGAgGCCGCGGcCAagaccgugaccguGCGCGCcGCg- -3'
miRNA:   3'- -ACCUgCGGUGCUaGU-------------UGCGCGuCGag -5'
29600 3' -56.5 NC_006151.1 + 117792 0.69 0.738619
Target:  5'- gGGGCGCCACGcccggCGGgGCGgGGCc- -3'
miRNA:   3'- aCCUGCGGUGCua---GUUgCGCgUCGag -5'
29600 3' -56.5 NC_006151.1 + 117277 0.72 0.555436
Target:  5'- cGGcCGCCGcCGA-CAGCGCGCGcgcgagcuGCUCg -3'
miRNA:   3'- aCCuGCGGU-GCUaGUUGCGCGU--------CGAG- -5'
29600 3' -56.5 NC_006151.1 + 117217 0.69 0.68855
Target:  5'- cGGGCGCgGCG-UCGACGaCGCGcGCg- -3'
miRNA:   3'- aCCUGCGgUGCuAGUUGC-GCGU-CGag -5'
29600 3' -56.5 NC_006151.1 + 116680 0.67 0.822047
Target:  5'- aGGAagGUCACGAa-GGCGagcaGCAGCUCg -3'
miRNA:   3'- aCCUg-CGGUGCUagUUGCg---CGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 116547 0.68 0.767608
Target:  5'- cUGGcCGCCGCGGUUgaAGCGCccGUAGCcgUCg -3'
miRNA:   3'- -ACCuGCGGUGCUAG--UUGCG--CGUCG--AG- -5'
29600 3' -56.5 NC_006151.1 + 116224 0.68 0.786339
Target:  5'- uUGGcgagccGCGCCACGGccgagagcUCGAgGUGCGGCa- -3'
miRNA:   3'- -ACC------UGCGGUGCU--------AGUUgCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 115573 0.7 0.678357
Target:  5'- cGGGCG-CGCGggCAggucGCGCucgaGCAGCUCg -3'
miRNA:   3'- aCCUGCgGUGCuaGU----UGCG----CGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 115209 0.69 0.708784
Target:  5'- cGGGCGCgcgCGCGAUCGugGcCGCuGC-Cg -3'
miRNA:   3'- aCCUGCG---GUGCUAGUugC-GCGuCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.