miRNA display CGI


Results 101 - 120 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 106649 0.75 0.404279
Target:  5'- cUGGACGCCGCGG-CGcACGUGCGcgaggccgcggcGCUCg -3'
miRNA:   3'- -ACCUGCGGUGCUaGU-UGCGCGU------------CGAG- -5'
29600 3' -56.5 NC_006151.1 + 106232 0.66 0.8627
Target:  5'- aUGGugGCCGCGGUggcCGGCGagccgaCGCAccuGUUCa -3'
miRNA:   3'- -ACCugCGGUGCUA---GUUGC------GCGU---CGAG- -5'
29600 3' -56.5 NC_006151.1 + 105768 0.66 0.877534
Target:  5'- cUGGGCGaCCGCGAcgUCAucgcacgguGCGCGaGGCg- -3'
miRNA:   3'- -ACCUGC-GGUGCU--AGU---------UGCGCgUCGag -5'
29600 3' -56.5 NC_006151.1 + 105078 0.66 0.884622
Target:  5'- cUGGACgugcagGCCGuCGAguggcugCAccAgGCGCGGCUCa -3'
miRNA:   3'- -ACCUG------CGGU-GCUa------GU--UgCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 104904 0.73 0.476912
Target:  5'- gUGGACGCgGCGG-CGGCGCGCGaccGCg- -3'
miRNA:   3'- -ACCUGCGgUGCUaGUUGCGCGU---CGag -5'
29600 3' -56.5 NC_006151.1 + 104804 0.66 0.847023
Target:  5'- cGuGCGCCGCGAccuggcggCGGCGCGCgacGGcCUCg -3'
miRNA:   3'- aCcUGCGGUGCUa-------GUUGCGCG---UC-GAG- -5'
29600 3' -56.5 NC_006151.1 + 104657 0.7 0.626991
Target:  5'- cGGcCGCCGacg-CGGCGCGCGcGCUCg -3'
miRNA:   3'- aCCuGCGGUgcuaGUUGCGCGU-CGAG- -5'
29600 3' -56.5 NC_006151.1 + 104608 0.69 0.718807
Target:  5'- cGcGGCGCCGaGAUCugcCGCGC-GCUCg -3'
miRNA:   3'- aC-CUGCGGUgCUAGuu-GCGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 104557 0.68 0.786339
Target:  5'- cUGGcCGCCcuggGCGcgCGGCGCGCGGaCg- -3'
miRNA:   3'- -ACCuGCGG----UGCuaGUUGCGCGUC-Gag -5'
29600 3' -56.5 NC_006151.1 + 104157 0.67 0.795498
Target:  5'- -cGACGCCGCGGagcugCGccccgccgccgaGCGCGC-GCUCg -3'
miRNA:   3'- acCUGCGGUGCUa----GU------------UGCGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 104055 0.69 0.698696
Target:  5'- cUGGGCGCgCGCGGcCGACGCgGC-GCUg -3'
miRNA:   3'- -ACCUGCG-GUGCUaGUUGCG-CGuCGAg -5'
29600 3' -56.5 NC_006151.1 + 104030 0.72 0.535374
Target:  5'- aGGugGagCGCGcgCAGCGC-CAGCUCu -3'
miRNA:   3'- aCCugCg-GUGCuaGUUGCGcGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 103653 0.68 0.767608
Target:  5'- cGGACGCggaCACGG-CGgagaaggcggcGCGCGCGGCg- -3'
miRNA:   3'- aCCUGCG---GUGCUaGU-----------UGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 103568 0.7 0.637289
Target:  5'- gGGGCGCU--GGUCAACGCGCucGCg- -3'
miRNA:   3'- aCCUGCGGugCUAGUUGCGCGu-CGag -5'
29600 3' -56.5 NC_006151.1 + 103268 0.75 0.378897
Target:  5'- aUGGGCgGCCACGugcugagcCAggagacgcGCGCGCGGCUCg -3'
miRNA:   3'- -ACCUG-CGGUGCua------GU--------UGCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 103075 0.66 0.847023
Target:  5'- cGGGCaCCugGAgCGGCGCG-AGCUg -3'
miRNA:   3'- aCCUGcGGugCUaGUUGCGCgUCGAg -5'
29600 3' -56.5 NC_006151.1 + 102950 0.72 0.524447
Target:  5'- cUGGACGCggcgcccgccgccCACGA-CGGCGCGCuGCUg -3'
miRNA:   3'- -ACCUGCG-------------GUGCUaGUUGCGCGuCGAg -5'
29600 3' -56.5 NC_006151.1 + 102786 0.67 0.793678
Target:  5'- gGcGACGCCuccGCGAguacuuucugcgCGGCGCGCAGUa- -3'
miRNA:   3'- aC-CUGCGG---UGCUa-----------GUUGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 102609 0.68 0.757093
Target:  5'- cGGGCGCUcgagcggGCGcgCGACGUgaGCGcGCUCg -3'
miRNA:   3'- aCCUGCGG-------UGCuaGUUGCG--CGU-CGAG- -5'
29600 3' -56.5 NC_006151.1 + 102501 0.66 0.847023
Target:  5'- aUGGACGCCGCG----GCGCgggaccccgGCGGCg- -3'
miRNA:   3'- -ACCUGCGGUGCuaguUGCG---------CGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.