miRNA display CGI


Results 121 - 140 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 102444 0.76 0.35778
Target:  5'- cGGGCGCUggacGCGcUCGaguccgggggcuccuACGCGCAGCUCu -3'
miRNA:   3'- aCCUGCGG----UGCuAGU---------------UGCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 102399 0.69 0.718807
Target:  5'- cUGGuCGCgGCGcgCGuCGCGCGGCcCg -3'
miRNA:   3'- -ACCuGCGgUGCuaGUuGCGCGUCGaG- -5'
29600 3' -56.5 NC_006151.1 + 101964 0.72 0.555436
Target:  5'- aGcACGCaCACGGUCGGCGgGCGGCcgUCg -3'
miRNA:   3'- aCcUGCG-GUGCUAGUUGCgCGUCG--AG- -5'
29600 3' -56.5 NC_006151.1 + 101759 0.68 0.767608
Target:  5'- cGGcCGCCGCGccgcCGACGCGgGGCc- -3'
miRNA:   3'- aCCuGCGGUGCua--GUUGCGCgUCGag -5'
29600 3' -56.5 NC_006151.1 + 100633 0.69 0.707778
Target:  5'- cUGGucagcgccgcgcuGCGCCGCGccGUCGACgaGCGCGGCg- -3'
miRNA:   3'- -ACC-------------UGCGGUGC--UAGUUG--CGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 100429 0.67 0.822047
Target:  5'- gGGGCGCUGCGcggcGUgAugGCGCAGaCg- -3'
miRNA:   3'- aCCUGCGGUGC----UAgUugCGCGUC-Gag -5'
29600 3' -56.5 NC_006151.1 + 100372 0.7 0.65581
Target:  5'- gUGGGCGCCuuccgcgccgaGGUCAACaCGCAccGCUCg -3'
miRNA:   3'- -ACCUGCGGug---------CUAGUUGcGCGU--CGAG- -5'
29600 3' -56.5 NC_006151.1 + 100226 0.66 0.854964
Target:  5'- cGGGCGCCGUGGcCgAGCGCGUGguggcGCUCg -3'
miRNA:   3'- aCCUGCGGUGCUaG-UUGCGCGU-----CGAG- -5'
29600 3' -56.5 NC_006151.1 + 99557 0.67 0.795498
Target:  5'- gUGGGCGCgGCGcgCGcgGCGCuGCUg -3'
miRNA:   3'- -ACCUGCGgUGCuaGUugCGCGuCGAg -5'
29600 3' -56.5 NC_006151.1 + 99515 0.66 0.847023
Target:  5'- gUGGuGCGCCACug-CAugGCGCcGCg- -3'
miRNA:   3'- -ACC-UGCGGUGcuaGUugCGCGuCGag -5'
29600 3' -56.5 NC_006151.1 + 99468 0.71 0.606415
Target:  5'- gGGACGUgACGG-CGGCGCuGgGGCUCc -3'
miRNA:   3'- aCCUGCGgUGCUaGUUGCG-CgUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 99191 0.72 0.555436
Target:  5'- gUGGACGCCACGggCGugugggAgGCGguGCa- -3'
miRNA:   3'- -ACCUGCGGUGCuaGU------UgCGCguCGag -5'
29600 3' -56.5 NC_006151.1 + 98773 0.69 0.728755
Target:  5'- aGGACgGCCuGCGcuaCGugGCGCAGCa- -3'
miRNA:   3'- aCCUG-CGG-UGCua-GUugCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 98359 0.66 0.877534
Target:  5'- cGGGCGUgCGCGGgcUCuggGCGCGCGcGCUg -3'
miRNA:   3'- aCCUGCG-GUGCU--AGu--UGCGCGU-CGAg -5'
29600 3' -56.5 NC_006151.1 + 98200 0.67 0.813361
Target:  5'- --cGCGCCGCGcgggGUCGAgUGCGCGGCg- -3'
miRNA:   3'- accUGCGGUGC----UAGUU-GCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 97835 0.7 0.626991
Target:  5'- uUGGuCGUCACGugc-GCGCGCAGCg- -3'
miRNA:   3'- -ACCuGCGGUGCuaguUGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 97776 0.69 0.698696
Target:  5'- aUGGcGCGCagCACGGUCGcgaagcgcucagGCGCGCGGC-Cg -3'
miRNA:   3'- -ACC-UGCG--GUGCUAGU------------UGCGCGUCGaG- -5'
29600 3' -56.5 NC_006151.1 + 97551 0.73 0.496071
Target:  5'- cGGAgGCCGuCGucgccgcCGAgGCGCAGCUCg -3'
miRNA:   3'- aCCUgCGGU-GCua-----GUUgCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 97476 0.73 0.505781
Target:  5'- cGGcucacCGCCACG-UgGACGCGCAGCg- -3'
miRNA:   3'- aCCu----GCGGUGCuAgUUGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 97356 0.67 0.830557
Target:  5'- gGGAagGCCGCGGcggCGGCggGCGCGGCg- -3'
miRNA:   3'- aCCUg-CGGUGCUa--GUUG--CGCGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.