miRNA display CGI


Results 141 - 160 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 96752 0.72 0.545375
Target:  5'- cGGAgGCCAUGG-CGGCGUGU-GCUCg -3'
miRNA:   3'- aCCUgCGGUGCUaGUUGCGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 96608 0.68 0.767608
Target:  5'- cGGGCGCgC-CGAcgUCGugcccgaggGCGCGCAGCg- -3'
miRNA:   3'- aCCUGCG-GuGCU--AGU---------UGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 96410 0.76 0.354606
Target:  5'- cGGcCGCCACcgcgggGAUCAGCGCG-AGCUCc -3'
miRNA:   3'- aCCuGCGGUG------CUAGUUGCGCgUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 96204 0.72 0.545375
Target:  5'- gGGGCGCCGCGucgcCGugGCgGCGGC-Cg -3'
miRNA:   3'- aCCUGCGGUGCua--GUugCG-CGUCGaG- -5'
29600 3' -56.5 NC_006151.1 + 95432 0.67 0.822047
Target:  5'- uUGGACGUgGCGAgggCGGCGcCGC-GCg- -3'
miRNA:   3'- -ACCUGCGgUGCUa--GUUGC-GCGuCGag -5'
29600 3' -56.5 NC_006151.1 + 94949 0.68 0.777039
Target:  5'- cGGACGCgcagCGCGuccCAGCGCauCGGCUCg -3'
miRNA:   3'- aCCUGCG----GUGCua-GUUGCGc-GUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 94596 0.68 0.767608
Target:  5'- gGGGCGCggucCGCGcacauGUCGAUGaGCAGCUCc -3'
miRNA:   3'- aCCUGCG----GUGC-----UAGUUGCgCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 93558 0.68 0.777039
Target:  5'- gGGAaagucCGCCGCGGgggCgGGCGCGCcaaagagcgGGCUCg -3'
miRNA:   3'- aCCU-----GCGGUGCUa--G-UUGCGCG---------UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 92730 0.7 0.637289
Target:  5'- gUGGugGCCAUGcUCAcGCcgGCGCGGCa- -3'
miRNA:   3'- -ACCugCGGUGCuAGU-UG--CGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 92127 0.67 0.795498
Target:  5'- gGGAacgGCCGC-AUC-GCGCGCGGCg- -3'
miRNA:   3'- aCCUg--CGGUGcUAGuUGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 91268 0.66 0.854964
Target:  5'- aGGACGcCCGCGuccgCAaaguacGCGCGCcGCgUCa -3'
miRNA:   3'- aCCUGC-GGUGCua--GU------UGCGCGuCG-AG- -5'
29600 3' -56.5 NC_006151.1 + 90638 0.67 0.821186
Target:  5'- cGGGCGCUugGCGAUgGGCGUguacaugcgcgggGCGGCg- -3'
miRNA:   3'- aCCUGCGG--UGCUAgUUGCG-------------CGUCGag -5'
29600 3' -56.5 NC_006151.1 + 90334 0.66 0.884622
Target:  5'- aUGGGCaggcgcagcaugGCCAUGAggcuggCGACGCcgaGCAGCaUCg -3'
miRNA:   3'- -ACCUG------------CGGUGCUa-----GUUGCG---CGUCG-AG- -5'
29600 3' -56.5 NC_006151.1 + 90220 0.73 0.496071
Target:  5'- aGGACGCCGgccgaGAUC-GCGuCGCGGCUg -3'
miRNA:   3'- aCCUGCGGUg----CUAGuUGC-GCGUCGAg -5'
29600 3' -56.5 NC_006151.1 + 89867 0.7 0.647583
Target:  5'- cGGuCGCCuCGua-GACGCGCcGCUCg -3'
miRNA:   3'- aCCuGCGGuGCuagUUGCGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 89558 0.67 0.830557
Target:  5'- gUGGAgGCCGCGAggcUGAUGgGCAcgcccauggGCUCg -3'
miRNA:   3'- -ACCUgCGGUGCUa--GUUGCgCGU---------CGAG- -5'
29600 3' -56.5 NC_006151.1 + 88420 0.69 0.735669
Target:  5'- gGGACGuCCGCGcgcGUCAcguucaccacggagACGCGCgugcggcgcccgAGCUCg -3'
miRNA:   3'- aCCUGC-GGUGC---UAGU--------------UGCGCG------------UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 87579 0.72 0.565551
Target:  5'- cGGACGUcuccgccggCACcAUCGACGC-CAGCUCg -3'
miRNA:   3'- aCCUGCG---------GUGcUAGUUGCGcGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 86654 0.66 0.884622
Target:  5'- gGaGGCGCuCACGc---GCGCGCuGCUCu -3'
miRNA:   3'- aC-CUGCG-GUGCuaguUGCGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 85780 0.75 0.407744
Target:  5'- cUGGACGCgCAcuCGAUCcGCGCGCgcgugcagcgccaccAGCUCa -3'
miRNA:   3'- -ACCUGCG-GU--GCUAGuUGCGCG---------------UCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.