Results 161 - 180 of 316 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 85395 | 0.7 | 0.668126 |
Target: 5'- -cGGCGCCAacgaGGUCGACGgCGCGGgCUUc -3' miRNA: 3'- acCUGCGGUg---CUAGUUGC-GCGUC-GAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 84907 | 0.69 | 0.698696 |
Target: 5'- aUGGuguACGCCGCGcgCGGCGCcgccuccgGCGuGCUCu -3' miRNA: 3'- -ACC---UGCGGUGCuaGUUGCG--------CGU-CGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 84641 | 0.67 | 0.838885 |
Target: 5'- cUGGAcaaCGCCAUGGcCGcggGCGCGCGcCUCg -3' miRNA: 3'- -ACCU---GCGGUGCUaGU---UGCGCGUcGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 84553 | 0.66 | 0.884622 |
Target: 5'- cUGGGCccGCCcgggcuucaGCGAgggccUCGACGCGCGcCUCg -3' miRNA: 3'- -ACCUG--CGG---------UGCU-----AGUUGCGCGUcGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 84492 | 0.68 | 0.758054 |
Target: 5'- aGGcCGCUGCGAUCc-CGgGCAGCg- -3' miRNA: 3'- aCCuGCGGUGCUAGuuGCgCGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 84461 | 0.67 | 0.795498 |
Target: 5'- --cGCGCCAUGGaCcGCGCGUGGUUCg -3' miRNA: 3'- accUGCGGUGCUaGuUGCGCGUCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 84411 | 0.72 | 0.515571 |
Target: 5'- gUGGGCGCgGUGAUaaggCGGCGCGCGGCg- -3' miRNA: 3'- -ACCUGCGgUGCUA----GUUGCGCGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 83042 | 0.67 | 0.838885 |
Target: 5'- cGGugGagACGcgCAGCGgcaGCAGCUUg -3' miRNA: 3'- aCCugCggUGCuaGUUGCg--CGUCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 83003 | 0.69 | 0.718807 |
Target: 5'- cGGcCGCgGCGca-GACGCGCGGCg- -3' miRNA: 3'- aCCuGCGgUGCuagUUGCGCGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 82715 | 0.67 | 0.795498 |
Target: 5'- aGGAgGcCCGCGAgggUCAggAgGCGCAGCg- -3' miRNA: 3'- aCCUgC-GGUGCU---AGU--UgCGCGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 82675 | 0.67 | 0.838885 |
Target: 5'- cGGcGCGCCGCGggCGAgG-GCGGCg- -3' miRNA: 3'- aCC-UGCGGUGCuaGUUgCgCGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 82623 | 0.77 | 0.281775 |
Target: 5'- cGGGCGCCGCGGUgGGCGCgggaccccccuGCGGCg- -3' miRNA: 3'- aCCUGCGGUGCUAgUUGCG-----------CGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 82180 | 0.67 | 0.795498 |
Target: 5'- cGGGgG-CGCGAUC-AUGCGCAuccGCUCg -3' miRNA: 3'- aCCUgCgGUGCUAGuUGCGCGU---CGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 81860 | 0.67 | 0.813361 |
Target: 5'- aGGcgcGCGUCGCucUCGACGCGCAGg-- -3' miRNA: 3'- aCC---UGCGGUGcuAGUUGCGCGUCgag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 81769 | 0.7 | 0.668126 |
Target: 5'- cGGGCGCCAcCGG--GACGCGCucGGCg- -3' miRNA: 3'- aCCUGCGGU-GCUagUUGCGCG--UCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 81721 | 0.66 | 0.884622 |
Target: 5'- gGGGCGCCGgguccucgcCGAagguccaggCGGCGCGgAGCUg -3' miRNA: 3'- aCCUGCGGU---------GCUa--------GUUGCGCgUCGAg -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 81601 | 0.67 | 0.830557 |
Target: 5'- cGGG-GCCGC---CGGCGCGCAGCa- -3' miRNA: 3'- aCCUgCGGUGcuaGUUGCGCGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 81373 | 0.69 | 0.698696 |
Target: 5'- cGGGCGCCagcGCGAgCcGCGCcGCGGCg- -3' miRNA: 3'- aCCUGCGG---UGCUaGuUGCG-CGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 80842 | 0.66 | 0.884622 |
Target: 5'- cGGGCgcgaGCCGCG-UCGACGUgaacgacaGCAGgUCg -3' miRNA: 3'- aCCUG----CGGUGCuAGUUGCG--------CGUCgAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 78217 | 0.72 | 0.525437 |
Target: 5'- cGGGCuCCACGucgcUCAcggGCGCGCAGCg- -3' miRNA: 3'- aCCUGcGGUGCu---AGU---UGCGCGUCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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