Results 141 - 160 of 316 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 69140 | 0.66 | 0.847023 |
Target: 5'- aGGGCG-CGCGGgugcUCGACGCcguGCcGCUCg -3' miRNA: 3'- aCCUGCgGUGCU----AGUUGCG---CGuCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 103075 | 0.66 | 0.847023 |
Target: 5'- cGGGCaCCugGAgCGGCGCG-AGCUg -3' miRNA: 3'- aCCUGcGGugCUaGUUGCGCgUCGAg -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 91268 | 0.66 | 0.854964 |
Target: 5'- aGGACGcCCGCGuccgCAaaguacGCGCGCcGCgUCa -3' miRNA: 3'- aCCUGC-GGUGCua--GU------UGCGCGuCG-AG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 114327 | 0.66 | 0.854964 |
Target: 5'- cGGGgGCC-UGcgCGACGUGCGcguGCUCu -3' miRNA: 3'- aCCUgCGGuGCuaGUUGCGCGU---CGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 672 | 0.66 | 0.854964 |
Target: 5'- cGGGCuCCGCGGaucgcaUCGGCGCGCcgAGCc- -3' miRNA: 3'- aCCUGcGGUGCU------AGUUGCGCG--UCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 68244 | 0.66 | 0.854964 |
Target: 5'- cGGGCGCguCaGGUagacGCGCGCGGCg- -3' miRNA: 3'- aCCUGCGguG-CUAgu--UGCGCGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 70568 | 0.66 | 0.854964 |
Target: 5'- aUGGACGCCgccACGcgCAccACGgccgaGCGGCUg -3' miRNA: 3'- -ACCUGCGG---UGCuaGU--UGCg----CGUCGAg -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 78142 | 0.66 | 0.854964 |
Target: 5'- cGGGCGCCuCGGaCGACGCcuCGGC-Cg -3' miRNA: 3'- aCCUGCGGuGCUaGUUGCGc-GUCGaG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 100226 | 0.66 | 0.854964 |
Target: 5'- cGGGCGCCGUGGcCgAGCGCGUGguggcGCUCg -3' miRNA: 3'- aCCUGCGGUGCUaG-UUGCGCGU-----CGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 114156 | 0.66 | 0.854964 |
Target: 5'- cGGGCGCaGCGAc---CGCGCGGCccUCg -3' miRNA: 3'- aCCUGCGgUGCUaguuGCGCGUCG--AG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 56941 | 0.66 | 0.854964 |
Target: 5'- gGGGCGUCGcCGGcgcUCAgcgccucgaGCGCGCGGUUg -3' miRNA: 3'- aCCUGCGGU-GCU---AGU---------UGCGCGUCGAg -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 52093 | 0.66 | 0.854964 |
Target: 5'- --aGCGCCGuCGAgagCAGCGCGCcGCg- -3' miRNA: 3'- accUGCGGU-GCUa--GUUGCGCGuCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 104804 | 0.66 | 0.847023 |
Target: 5'- cGuGCGCCGCGAccuggcggCGGCGCGCgacGGcCUCg -3' miRNA: 3'- aCcUGCGGUGCUa-------GUUGCGCG---UC-GAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 132368 | 0.66 | 0.847023 |
Target: 5'- aGGGgGCCagGCGcgCGACGuCGCGGUa- -3' miRNA: 3'- aCCUgCGG--UGCuaGUUGC-GCGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 102501 | 0.66 | 0.847023 |
Target: 5'- aUGGACGCCGCG----GCGCgggaccccgGCGGCg- -3' miRNA: 3'- -ACCUGCGGUGCuaguUGCG---------CGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 31624 | 0.66 | 0.854179 |
Target: 5'- gGGAUGCCGCGccggCAcgagcgcacgcggGCGCGCGGg-- -3' miRNA: 3'- aCCUGCGGUGCua--GU-------------UGCGCGUCgag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 68721 | 0.66 | 0.854964 |
Target: 5'- aGGAaaaCGCCGCccagCAGCGgGCcGCUCu -3' miRNA: 3'- aCCU---GCGGUGcua-GUUGCgCGuCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 11101 | 0.66 | 0.854964 |
Target: 5'- aGGGCGCUGCGAccCAGagagaGCGCcgAGCUa -3' miRNA: 3'- aCCUGCGGUGCUa-GUUg----CGCG--UCGAg -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 27186 | 0.66 | 0.854964 |
Target: 5'- gGGGCGCCAgGGggc-CGCGCAGa-- -3' miRNA: 3'- aCCUGCGGUgCUaguuGCGCGUCgag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 64614 | 0.66 | 0.854964 |
Target: 5'- aGcGGCGCCGCGccgccggccgCGGgGCGCGGCg- -3' miRNA: 3'- aC-CUGCGGUGCua--------GUUgCGCGUCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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