Results 121 - 140 of 316 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 132316 | 0.67 | 0.838885 |
Target: 5'- -aGGCGCCACGAgagCucGCGCGCcguGGC-Ca -3' miRNA: 3'- acCUGCGGUGCUa--Gu-UGCGCG---UCGaG- -5' |
|||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 84641 | 0.67 | 0.838885 |
Target: 5'- cUGGAcaaCGCCAUGGcCGcggGCGCGCGcCUCg -3' miRNA: 3'- -ACCU---GCGGUGCUaGU---UGCGCGUcGAG- -5' |
|||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 11101 | 0.66 | 0.854964 |
Target: 5'- aGGGCGCUGCGAccCAGagagaGCGCcgAGCUa -3' miRNA: 3'- aCCUGCGGUGCUa-GUUg----CGCG--UCGAg -5' |
|||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 27186 | 0.66 | 0.854964 |
Target: 5'- gGGGCGCCAgGGggc-CGCGCAGa-- -3' miRNA: 3'- aCCUGCGGUgCUaguuGCGCGUCgag -5' |
|||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 64614 | 0.66 | 0.854964 |
Target: 5'- aGcGGCGCCGCGccgccggccgCGGgGCGCGGCg- -3' miRNA: 3'- aC-CUGCGGUGCua--------GUUgCGCGUCGag -5' |
|||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 43389 | 0.66 | 0.8627 |
Target: 5'- gUGGugGCCGuCGcUCGugGC-CGGCa- -3' miRNA: 3'- -ACCugCGGU-GCuAGUugCGcGUCGag -5' |
|||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 21046 | 0.66 | 0.8627 |
Target: 5'- aGGACGCC-Cc--CGACGCGCGGg-- -3' miRNA: 3'- aCCUGCGGuGcuaGUUGCGCGUCgag -5' |
|||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 3950 | 0.66 | 0.8627 |
Target: 5'- cGGGCuCCGCGGgccCGGgcCGCGCGGCg- -3' miRNA: 3'- aCCUGcGGUGCUa--GUU--GCGCGUCGag -5' |
|||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 15879 | 0.66 | 0.8627 |
Target: 5'- aGGACGCCGCccgccGGggGACGCGC-GCc- -3' miRNA: 3'- aCCUGCGGUG-----CUagUUGCGCGuCGag -5' |
|||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 128794 | 0.66 | 0.854964 |
Target: 5'- cGGuCGCCucgGCGAgcgCGGCGCGCguGGCc- -3' miRNA: 3'- aCCuGCGG---UGCUa--GUUGCGCG--UCGag -5' |
|||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 114156 | 0.66 | 0.854964 |
Target: 5'- cGGGCGCaGCGAc---CGCGCGGCccUCg -3' miRNA: 3'- aCCUGCGgUGCUaguuGCGCGUCG--AG- -5' |
|||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 100226 | 0.66 | 0.854964 |
Target: 5'- cGGGCGCCGUGGcCgAGCGCGUGguggcGCUCg -3' miRNA: 3'- aCCUGCGGUGCUaG-UUGCGCGU-----CGAG- -5' |
|||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 78142 | 0.66 | 0.854964 |
Target: 5'- cGGGCGCCuCGGaCGACGCcuCGGC-Cg -3' miRNA: 3'- aCCUGCGGuGCUaGUUGCGc-GUCGaG- -5' |
|||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 70568 | 0.66 | 0.854964 |
Target: 5'- aUGGACGCCgccACGcgCAccACGgccgaGCGGCUg -3' miRNA: 3'- -ACCUGCGG---UGCuaGU--UGCg----CGUCGAg -5' |
|||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 68244 | 0.66 | 0.854964 |
Target: 5'- cGGGCGCguCaGGUagacGCGCGCGGCg- -3' miRNA: 3'- aCCUGCGguG-CUAgu--UGCGCGUCGag -5' |
|||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 672 | 0.66 | 0.854964 |
Target: 5'- cGGGCuCCGCGGaucgcaUCGGCGCGCcgAGCc- -3' miRNA: 3'- aCCUGcGGUGCU------AGUUGCGCG--UCGag -5' |
|||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 114327 | 0.66 | 0.854964 |
Target: 5'- cGGGgGCC-UGcgCGACGUGCGcguGCUCu -3' miRNA: 3'- aCCUgCGGuGCuaGUUGCGCGU---CGAG- -5' |
|||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 91268 | 0.66 | 0.854964 |
Target: 5'- aGGACGcCCGCGuccgCAaaguacGCGCGCcGCgUCa -3' miRNA: 3'- aCCUGC-GGUGCua--GU------UGCGCGuCG-AG- -5' |
|||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 56941 | 0.66 | 0.854964 |
Target: 5'- gGGGCGUCGcCGGcgcUCAgcgccucgaGCGCGCGGUUg -3' miRNA: 3'- aCCUGCGGU-GCU---AGU---------UGCGCGUCGAg -5' |
|||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 52093 | 0.66 | 0.854964 |
Target: 5'- --aGCGCCGuCGAgagCAGCGCGCcGCg- -3' miRNA: 3'- accUGCGGU-GCUa--GUUGCGCGuCGag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home