miRNA display CGI


Results 1 - 20 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 58421 0.66 0.877534
Target:  5'- cUGGGCgugcggcaGCCACGccUCGguggcgugcgcGCGCGCGGCgUCg -3'
miRNA:   3'- -ACCUG--------CGGUGCu-AGU-----------UGCGCGUCG-AG- -5'
29600 3' -56.5 NC_006151.1 + 16999 0.66 0.884622
Target:  5'- gUGGACcCgCGCGAaCAugGCGCGGgUg -3'
miRNA:   3'- -ACCUGcG-GUGCUaGUugCGCGUCgAg -5'
29600 3' -56.5 NC_006151.1 + 13680 0.66 0.884622
Target:  5'- gGGACGCgC-CGGcCAAUGCG-GGCUCc -3'
miRNA:   3'- aCCUGCG-GuGCUaGUUGCGCgUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 113314 0.66 0.884622
Target:  5'- gUGGACGCCACGcUgGGgccCGUGCuGGCg- -3'
miRNA:   3'- -ACCUGCGGUGCuAgUU---GCGCG-UCGag -5'
29600 3' -56.5 NC_006151.1 + 86654 0.66 0.884622
Target:  5'- gGaGGCGCuCACGc---GCGCGCuGCUCu -3'
miRNA:   3'- aC-CUGCG-GUGCuaguUGCGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 108097 0.66 0.877534
Target:  5'- ---cCGCCGCGAccgCGGcCGCGCAGgUCc -3'
miRNA:   3'- accuGCGGUGCUa--GUU-GCGCGUCgAG- -5'
29600 3' -56.5 NC_006151.1 + 105768 0.66 0.877534
Target:  5'- cUGGGCGaCCGCGAcgUCAucgcacgguGCGCGaGGCg- -3'
miRNA:   3'- -ACCUGC-GGUGCU--AGU---------UGCGCgUCGag -5'
29600 3' -56.5 NC_006151.1 + 98359 0.66 0.877534
Target:  5'- cGGGCGUgCGCGGgcUCuggGCGCGCGcGCUg -3'
miRNA:   3'- aCCUGCG-GUGCU--AGu--UGCGCGU-CGAg -5'
29600 3' -56.5 NC_006151.1 + 128034 0.66 0.877534
Target:  5'- cUGcGACGcCCGCGG-CAGCG-GCGGCa- -3'
miRNA:   3'- -AC-CUGC-GGUGCUaGUUGCgCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 17076 0.66 0.884622
Target:  5'- cGGGcCGCCGCcgGGUCAgGCGCGC-GCcCg -3'
miRNA:   3'- aCCU-GCGGUG--CUAGU-UGCGCGuCGaG- -5'
29600 3' -56.5 NC_006151.1 + 66571 0.66 0.884622
Target:  5'- gUGGACcCgGCGcUCGcGCGCGCGGC-Cg -3'
miRNA:   3'- -ACCUGcGgUGCuAGU-UGCGCGUCGaG- -5'
29600 3' -56.5 NC_006151.1 + 68547 0.66 0.884622
Target:  5'- aGGucccgcgacACGCCGacgcaGAgguACGCGUAGCUCu -3'
miRNA:   3'- aCC---------UGCGGUg----CUaguUGCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 105078 0.66 0.884622
Target:  5'- cUGGACgugcagGCCGuCGAguggcugCAccAgGCGCGGCUCa -3'
miRNA:   3'- -ACCUG------CGGU-GCUa------GU--UgCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 90334 0.66 0.884622
Target:  5'- aUGGGCaggcgcagcaugGCCAUGAggcuggCGACGCcgaGCAGCaUCg -3'
miRNA:   3'- -ACCUG------------CGGUGCUa-----GUUGCG---CGUCG-AG- -5'
29600 3' -56.5 NC_006151.1 + 80842 0.66 0.884622
Target:  5'- cGGGCgcgaGCCGCG-UCGACGUgaacgacaGCAGgUCg -3'
miRNA:   3'- aCCUG----CGGUGCuAGUUGCG--------CGUCgAG- -5'
29600 3' -56.5 NC_006151.1 + 20772 0.66 0.884622
Target:  5'- cGGACGCgCGCcg--GGCGaGCGGCUCg -3'
miRNA:   3'- aCCUGCG-GUGcuagUUGCgCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 111052 0.66 0.884622
Target:  5'- aGGGCGCCcuCGAgcgUCuGCGCGguGaUCg -3'
miRNA:   3'- aCCUGCGGu-GCU---AGuUGCGCguCgAG- -5'
29600 3' -56.5 NC_006151.1 + 109470 0.66 0.884622
Target:  5'- cGGAgCGgCACGGggAGCcccCGCGGCUCa -3'
miRNA:   3'- aCCU-GCgGUGCUagUUGc--GCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 84553 0.66 0.884622
Target:  5'- cUGGGCccGCCcgggcuucaGCGAgggccUCGACGCGCGcCUCg -3'
miRNA:   3'- -ACCUG--CGG---------UGCU-----AGUUGCGCGUcGAG- -5'
29600 3' -56.5 NC_006151.1 + 81721 0.66 0.884622
Target:  5'- gGGGCGCCGgguccucgcCGAagguccaggCGGCGCGgAGCUg -3'
miRNA:   3'- aCCUGCGGU---------GCUa--------GUUGCGCgUCGAg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.