Results 1 - 20 of 316 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29600 | 3' | -56.5 | NC_006151.1 | + | 58421 | 0.66 | 0.877534 |
Target: 5'- cUGGGCgugcggcaGCCACGccUCGguggcgugcgcGCGCGCGGCgUCg -3' miRNA: 3'- -ACCUG--------CGGUGCu-AGU-----------UGCGCGUCG-AG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 16999 | 0.66 | 0.884622 |
Target: 5'- gUGGACcCgCGCGAaCAugGCGCGGgUg -3' miRNA: 3'- -ACCUGcG-GUGCUaGUugCGCGUCgAg -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 13680 | 0.66 | 0.884622 |
Target: 5'- gGGACGCgC-CGGcCAAUGCG-GGCUCc -3' miRNA: 3'- aCCUGCG-GuGCUaGUUGCGCgUCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 113314 | 0.66 | 0.884622 |
Target: 5'- gUGGACGCCACGcUgGGgccCGUGCuGGCg- -3' miRNA: 3'- -ACCUGCGGUGCuAgUU---GCGCG-UCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 86654 | 0.66 | 0.884622 |
Target: 5'- gGaGGCGCuCACGc---GCGCGCuGCUCu -3' miRNA: 3'- aC-CUGCG-GUGCuaguUGCGCGuCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 108097 | 0.66 | 0.877534 |
Target: 5'- ---cCGCCGCGAccgCGGcCGCGCAGgUCc -3' miRNA: 3'- accuGCGGUGCUa--GUU-GCGCGUCgAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 105768 | 0.66 | 0.877534 |
Target: 5'- cUGGGCGaCCGCGAcgUCAucgcacgguGCGCGaGGCg- -3' miRNA: 3'- -ACCUGC-GGUGCU--AGU---------UGCGCgUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 98359 | 0.66 | 0.877534 |
Target: 5'- cGGGCGUgCGCGGgcUCuggGCGCGCGcGCUg -3' miRNA: 3'- aCCUGCG-GUGCU--AGu--UGCGCGU-CGAg -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 128034 | 0.66 | 0.877534 |
Target: 5'- cUGcGACGcCCGCGG-CAGCG-GCGGCa- -3' miRNA: 3'- -AC-CUGC-GGUGCUaGUUGCgCGUCGag -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 17076 | 0.66 | 0.884622 |
Target: 5'- cGGGcCGCCGCcgGGUCAgGCGCGC-GCcCg -3' miRNA: 3'- aCCU-GCGGUG--CUAGU-UGCGCGuCGaG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 66571 | 0.66 | 0.884622 |
Target: 5'- gUGGACcCgGCGcUCGcGCGCGCGGC-Cg -3' miRNA: 3'- -ACCUGcGgUGCuAGU-UGCGCGUCGaG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 68547 | 0.66 | 0.884622 |
Target: 5'- aGGucccgcgacACGCCGacgcaGAgguACGCGUAGCUCu -3' miRNA: 3'- aCC---------UGCGGUg----CUaguUGCGCGUCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 105078 | 0.66 | 0.884622 |
Target: 5'- cUGGACgugcagGCCGuCGAguggcugCAccAgGCGCGGCUCa -3' miRNA: 3'- -ACCUG------CGGU-GCUa------GU--UgCGCGUCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 90334 | 0.66 | 0.884622 |
Target: 5'- aUGGGCaggcgcagcaugGCCAUGAggcuggCGACGCcgaGCAGCaUCg -3' miRNA: 3'- -ACCUG------------CGGUGCUa-----GUUGCG---CGUCG-AG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 80842 | 0.66 | 0.884622 |
Target: 5'- cGGGCgcgaGCCGCG-UCGACGUgaacgacaGCAGgUCg -3' miRNA: 3'- aCCUG----CGGUGCuAGUUGCG--------CGUCgAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 20772 | 0.66 | 0.884622 |
Target: 5'- cGGACGCgCGCcg--GGCGaGCGGCUCg -3' miRNA: 3'- aCCUGCG-GUGcuagUUGCgCGUCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 111052 | 0.66 | 0.884622 |
Target: 5'- aGGGCGCCcuCGAgcgUCuGCGCGguGaUCg -3' miRNA: 3'- aCCUGCGGu-GCU---AGuUGCGCguCgAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 109470 | 0.66 | 0.884622 |
Target: 5'- cGGAgCGgCACGGggAGCcccCGCGGCUCa -3' miRNA: 3'- aCCU-GCgGUGCUagUUGc--GCGUCGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 84553 | 0.66 | 0.884622 |
Target: 5'- cUGGGCccGCCcgggcuucaGCGAgggccUCGACGCGCGcCUCg -3' miRNA: 3'- -ACCUG--CGG---------UGCU-----AGUUGCGCGUcGAG- -5' |
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29600 | 3' | -56.5 | NC_006151.1 | + | 81721 | 0.66 | 0.884622 |
Target: 5'- gGGGCGCCGgguccucgcCGAagguccaggCGGCGCGgAGCUg -3' miRNA: 3'- aCCUGCGGU---------GCUa--------GUUGCGCgUCGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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