miRNA display CGI


Results 1 - 20 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 131656 0.81 0.159573
Target:  5'- cGGGCGCCGCaGAUCcgaccGCGCGCGGCgUCa -3'
miRNA:   3'- aCCUGCGGUG-CUAGu----UGCGCGUCG-AG- -5'
29600 3' -56.5 NC_006151.1 + 118432 0.8 0.205472
Target:  5'- cGGGCGCgGaGGUguGCGCGCGGCUCg -3'
miRNA:   3'- aCCUGCGgUgCUAguUGCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 24517 0.79 0.238202
Target:  5'- uUGGGCGCCGCcacguugCAGCGCGCGGCc- -3'
miRNA:   3'- -ACCUGCGGUGcua----GUUGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 82623 0.77 0.281775
Target:  5'- cGGGCGCCGCGGUgGGCGCgggaccccccuGCGGCg- -3'
miRNA:   3'- aCCUGCGGUGCUAgUUGCG-----------CGUCGag -5'
29600 3' -56.5 NC_006151.1 + 137114 0.77 0.288492
Target:  5'- gGGACGCCugGGggcgcgCGACgGCGCGGCg- -3'
miRNA:   3'- aCCUGCGGugCUa-----GUUG-CGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 120332 0.77 0.302302
Target:  5'- cGGACGCCGCGcgCGccCGCGUggccgGGCUCg -3'
miRNA:   3'- aCCUGCGGUGCuaGUu-GCGCG-----UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 3262 0.77 0.302302
Target:  5'- gGGGCGCCGCG----GCGCGCGGCg- -3'
miRNA:   3'- aCCUGCGGUGCuaguUGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 20140 0.77 0.309396
Target:  5'- cGGGCGCCGCGGgggCGGCGCGUGGa-- -3'
miRNA:   3'- aCCUGCGGUGCUa--GUUGCGCGUCgag -5'
29600 3' -56.5 NC_006151.1 + 123355 0.76 0.316616
Target:  5'- gUGGACGCCGCGcuccuuccggccGUC-ACGCGCAaGUUCu -3'
miRNA:   3'- -ACCUGCGGUGC------------UAGuUGCGCGU-CGAG- -5'
29600 3' -56.5 NC_006151.1 + 96410 0.76 0.354606
Target:  5'- cGGcCGCCACcgcgggGAUCAGCGCG-AGCUCc -3'
miRNA:   3'- aCCuGCGGUG------CUAGUUGCGCgUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 102444 0.76 0.35778
Target:  5'- cGGGCGCUggacGCGcUCGaguccgggggcuccuACGCGCAGCUCu -3'
miRNA:   3'- aCCUGCGG----UGCuAGU---------------UGCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 50391 0.75 0.370677
Target:  5'- cGGGCcCCGCGGUCcuCGCGCGGCc- -3'
miRNA:   3'- aCCUGcGGUGCUAGuuGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 103268 0.75 0.378897
Target:  5'- aUGGGCgGCCACGugcugagcCAggagacgcGCGCGCGGCUCg -3'
miRNA:   3'- -ACCUG-CGGUGCua------GU--------UGCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 123526 0.75 0.3957
Target:  5'- aUGGugGCCcGCGAUUggUGCGuCAGCg- -3'
miRNA:   3'- -ACCugCGG-UGCUAGuuGCGC-GUCGag -5'
29600 3' -56.5 NC_006151.1 + 131786 0.75 0.3957
Target:  5'- cGGGCGCCGCcgucGUCAGCGCGCcauccuccucGGcCUCg -3'
miRNA:   3'- aCCUGCGGUGc---UAGUUGCGCG----------UC-GAG- -5'
29600 3' -56.5 NC_006151.1 + 106649 0.75 0.404279
Target:  5'- cUGGACGCCGCGG-CGcACGUGCGcgaggccgcggcGCUCg -3'
miRNA:   3'- -ACCUGCGGUGCUaGU-UGCGCGU------------CGAG- -5'
29600 3' -56.5 NC_006151.1 + 85780 0.75 0.407744
Target:  5'- cUGGACGCgCAcuCGAUCcGCGCGCgcgugcagcgccaccAGCUCa -3'
miRNA:   3'- -ACCUGCG-GU--GCUAGuUGCGCG---------------UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 28095 0.74 0.421786
Target:  5'- cGGGCGuCCuCGAgCGGgGCGCGGCUCc -3'
miRNA:   3'- aCCUGC-GGuGCUaGUUgCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 55224 0.74 0.421786
Target:  5'- cGGGCaCCACGGcgcCGGCGCGCAGC-Cg -3'
miRNA:   3'- aCCUGcGGUGCUa--GUUGCGCGUCGaG- -5'
29600 3' -56.5 NC_006151.1 + 65826 0.74 0.430709
Target:  5'- aUGGGCgGCCGCGc-CAGCGCGgccCGGCUCa -3'
miRNA:   3'- -ACCUG-CGGUGCuaGUUGCGC---GUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.