miRNA display CGI


Results 1 - 20 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 672 0.66 0.854964
Target:  5'- cGGGCuCCGCGGaucgcaUCGGCGCGCcgAGCc- -3'
miRNA:   3'- aCCUGcGGUGCU------AGUUGCGCG--UCGag -5'
29600 3' -56.5 NC_006151.1 + 2017 0.72 0.525437
Target:  5'- gGGGCGCCcCGcUCAGCGgaGCAGCa- -3'
miRNA:   3'- aCCUGCGGuGCuAGUUGCg-CGUCGag -5'
29600 3' -56.5 NC_006151.1 + 2346 0.67 0.804509
Target:  5'- cGGgcuccagcaGCGCCGCGGcgCAgaagGCGCGCAaCUCg -3'
miRNA:   3'- aCC---------UGCGGUGCUa-GU----UGCGCGUcGAG- -5'
29600 3' -56.5 NC_006151.1 + 2459 0.7 0.647583
Target:  5'- gGGGCGCCgagcccccaGCGGUUGGcCGCGCGGUg- -3'
miRNA:   3'- aCCUGCGG---------UGCUAGUU-GCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 2746 0.68 0.79002
Target:  5'- cGGGC-CCACGAUggagcuagaguccagCAcggccGCGCGgAGCUCg -3'
miRNA:   3'- aCCUGcGGUGCUA---------------GU-----UGCGCgUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 3142 0.69 0.68855
Target:  5'- gGGGCGCCcucgGCGGgcUCGGCGCagAGCUCc -3'
miRNA:   3'- aCCUGCGG----UGCU--AGUUGCGcgUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 3262 0.77 0.302302
Target:  5'- gGGGCGCCGCG----GCGCGCGGCg- -3'
miRNA:   3'- aCCUGCGGUGCuaguUGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 3433 0.69 0.708784
Target:  5'- gGGACGCgGCGGaagccgccgUCGggcGCGgGguGCUCg -3'
miRNA:   3'- aCCUGCGgUGCU---------AGU---UGCgCguCGAG- -5'
29600 3' -56.5 NC_006151.1 + 3950 0.66 0.8627
Target:  5'- cGGGCuCCGCGGgccCGGgcCGCGCGGCg- -3'
miRNA:   3'- aCCUGcGGUGCUa--GUU--GCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 4275 0.71 0.605387
Target:  5'- aGGACGCCGCGG-CAggccaggacgcagGCGUccGCcAGCUCg -3'
miRNA:   3'- aCCUGCGGUGCUaGU-------------UGCG--CG-UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 4541 0.67 0.795498
Target:  5'- cUGGGCgGCCAUGGcgucccCGAUGUGCGGCa- -3'
miRNA:   3'- -ACCUG-CGGUGCUa-----GUUGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 6400 0.72 0.565551
Target:  5'- cGGGCGCCgagcGCGGagAGCGgGCGGCg- -3'
miRNA:   3'- aCCUGCGG----UGCUagUUGCgCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 7637 0.69 0.737637
Target:  5'- cGGuCGCCccacccgcgccucGCGcUCGGCGCGC-GCUCc -3'
miRNA:   3'- aCCuGCGG-------------UGCuAGUUGCGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 8300 0.71 0.600254
Target:  5'- cGGGCGCCGCGuccCGccccgagcccccgggGCGCGCGGgcCUCg -3'
miRNA:   3'- aCCUGCGGUGCua-GU---------------UGCGCGUC--GAG- -5'
29600 3' -56.5 NC_006151.1 + 11101 0.66 0.854964
Target:  5'- aGGGCGCUGCGAccCAGagagaGCGCcgAGCUa -3'
miRNA:   3'- aCCUGCGGUGCUa-GUUg----CGCG--UCGAg -5'
29600 3' -56.5 NC_006151.1 + 11314 0.69 0.708784
Target:  5'- cGGGcCGCCGCGAUac-CGCGCgGGCg- -3'
miRNA:   3'- aCCU-GCGGUGCUAguuGCGCG-UCGag -5'
29600 3' -56.5 NC_006151.1 + 11359 0.68 0.777039
Target:  5'- cGGGCGCUACc----GCGCGCuccGCUCg -3'
miRNA:   3'- aCCUGCGGUGcuaguUGCGCGu--CGAG- -5'
29600 3' -56.5 NC_006151.1 + 13108 0.67 0.822047
Target:  5'- aGGuCGCgGCgGGUC-ACGCGC-GCUCc -3'
miRNA:   3'- aCCuGCGgUG-CUAGuUGCGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 13680 0.66 0.884622
Target:  5'- gGGACGCgC-CGGcCAAUGCG-GGCUCc -3'
miRNA:   3'- aCCUGCG-GuGCUaGUUGCGCgUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 13948 0.69 0.738619
Target:  5'- cGGGCGCCcCGGg-GACGCGcCGGC-Ca -3'
miRNA:   3'- aCCUGCGGuGCUagUUGCGC-GUCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.