miRNA display CGI


Results 21 - 40 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 128034 0.66 0.877534
Target:  5'- cUGcGACGcCCGCGG-CAGCG-GCGGCa- -3'
miRNA:   3'- -AC-CUGC-GGUGCUaGUUGCgCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 98359 0.66 0.877534
Target:  5'- cGGGCGUgCGCGGgcUCuggGCGCGCGcGCUg -3'
miRNA:   3'- aCCUGCG-GUGCU--AGu--UGCGCGU-CGAg -5'
29600 3' -56.5 NC_006151.1 + 105768 0.66 0.877534
Target:  5'- cUGGGCGaCCGCGAcgUCAucgcacgguGCGCGaGGCg- -3'
miRNA:   3'- -ACCUGC-GGUGCU--AGU---------UGCGCgUCGag -5'
29600 3' -56.5 NC_006151.1 + 108097 0.66 0.877534
Target:  5'- ---cCGCCGCGAccgCGGcCGCGCAGgUCc -3'
miRNA:   3'- accuGCGGUGCUa--GUU-GCGCGUCgAG- -5'
29600 3' -56.5 NC_006151.1 + 134173 0.66 0.873175
Target:  5'- aGGugGCgcugcccaccggauaCGCGAugcUCGuCGCGCAGCg- -3'
miRNA:   3'- aCCugCG---------------GUGCU---AGUuGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 130723 0.66 0.870225
Target:  5'- cGGGgGCC-CGcgCGGCcgcgGCGCAGCg- -3'
miRNA:   3'- aCCUgCGGuGCuaGUUG----CGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 17873 0.66 0.870225
Target:  5'- -uGAUGCCccCGAUCAGCGcCGaCAGCg- -3'
miRNA:   3'- acCUGCGGu-GCUAGUUGC-GC-GUCGag -5'
29600 3' -56.5 NC_006151.1 + 45068 0.66 0.870225
Target:  5'- gGGACGgCugGAg-AGCGCGCAccGCg- -3'
miRNA:   3'- aCCUGCgGugCUagUUGCGCGU--CGag -5'
29600 3' -56.5 NC_006151.1 + 120787 0.66 0.870225
Target:  5'- cGGACGCgGC---CGACGCGgAGCg- -3'
miRNA:   3'- aCCUGCGgUGcuaGUUGCGCgUCGag -5'
29600 3' -56.5 NC_006151.1 + 122747 0.66 0.870225
Target:  5'- cGcGCgGCCGCGAgcucgacaucaUCGACGgGCuGCUCg -3'
miRNA:   3'- aCcUG-CGGUGCU-----------AGUUGCgCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 123221 0.66 0.870225
Target:  5'- cGGugGCCGCcgGGUuccgcgcaCGGCGCGC-GUUCu -3'
miRNA:   3'- aCCugCGGUG--CUA--------GUUGCGCGuCGAG- -5'
29600 3' -56.5 NC_006151.1 + 15879 0.66 0.8627
Target:  5'- aGGACGCCGCccgccGGggGACGCGC-GCc- -3'
miRNA:   3'- aCCUGCGGUG-----CUagUUGCGCGuCGag -5'
29600 3' -56.5 NC_006151.1 + 3950 0.66 0.8627
Target:  5'- cGGGCuCCGCGGgccCGGgcCGCGCGGCg- -3'
miRNA:   3'- aCCUGcGGUGCUa--GUU--GCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 21046 0.66 0.8627
Target:  5'- aGGACGCC-Cc--CGACGCGCGGg-- -3'
miRNA:   3'- aCCUGCGGuGcuaGUUGCGCGUCgag -5'
29600 3' -56.5 NC_006151.1 + 43389 0.66 0.8627
Target:  5'- gUGGugGCCGuCGcUCGugGC-CGGCa- -3'
miRNA:   3'- -ACCugCGGU-GCuAGUugCGcGUCGag -5'
29600 3' -56.5 NC_006151.1 + 106232 0.66 0.8627
Target:  5'- aUGGugGCCGCGGUggcCGGCGagccgaCGCAccuGUUCa -3'
miRNA:   3'- -ACCugCGGUGCUA---GUUGC------GCGU---CGAG- -5'
29600 3' -56.5 NC_006151.1 + 112055 0.66 0.8627
Target:  5'- cGGGCgGCgGCGGUgGugGUGgGGCUg -3'
miRNA:   3'- aCCUG-CGgUGCUAgUugCGCgUCGAg -5'
29600 3' -56.5 NC_006151.1 + 122969 0.66 0.8627
Target:  5'- cGGACGCCgGCGAcgGGgGCGuCGGCg- -3'
miRNA:   3'- aCCUGCGG-UGCUagUUgCGC-GUCGag -5'
29600 3' -56.5 NC_006151.1 + 115116 0.66 0.8627
Target:  5'- -cGGCGCCGCcggCGACGCGC-GCg- -3'
miRNA:   3'- acCUGCGGUGcuaGUUGCGCGuCGag -5'
29600 3' -56.5 NC_006151.1 + 123674 0.66 0.8627
Target:  5'- gGGACGUCGaGGUCcucCGCGCGGaUCg -3'
miRNA:   3'- aCCUGCGGUgCUAGuu-GCGCGUCgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.