miRNA display CGI


Results 61 - 80 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 5' -63.1 NC_006151.1 + 27044 0.67 0.459718
Target:  5'- aGGGGCgcugGCGCGuGU-AGCCCauGGCGUa -3'
miRNA:   3'- aCCUCGa---CGCGC-CGcUCGGG--UCGCAc -5'
29600 5' -63.1 NC_006151.1 + 91564 0.67 0.486987
Target:  5'- cGGGGCgauggcgGCGCGcGCGuGCuCCAG-GUGc -3'
miRNA:   3'- aCCUCGa------CGCGC-CGCuCG-GGUCgCAC- -5'
29600 5' -63.1 NC_006151.1 + 117617 0.67 0.486987
Target:  5'- cGuGGGCUcgcGCGCGaGCGuGCCCA-CGUGc -3'
miRNA:   3'- aC-CUCGA---CGCGC-CGCuCGGGUcGCAC- -5'
29600 5' -63.1 NC_006151.1 + 3026 0.67 0.496246
Target:  5'- cGGGGCgcccgguccaGUucccggcccagGCGuGCGAGUCCGGCGUGc -3'
miRNA:   3'- aCCUCGa---------CG-----------CGC-CGCUCGGGUCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 138118 0.67 0.518781
Target:  5'- cGGAcauGCUGCGCGGCcuggccguggacgcgGAGgaCCGGCGc- -3'
miRNA:   3'- aCCU---CGACGCGCCG---------------CUCg-GGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 126361 0.67 0.514996
Target:  5'- aGGAGCacaagGCGCGcaagaagaacaGCGGGCCC-GCGcUGc -3'
miRNA:   3'- aCCUCGa----CGCGC-----------CGCUCGGGuCGC-AC- -5'
29600 5' -63.1 NC_006151.1 + 113696 0.67 0.514996
Target:  5'- aGGGGCgcgUGUGCGGgGAGCuguggaccCUGGCGUa -3'
miRNA:   3'- aCCUCG---ACGCGCCgCUCG--------GGUCGCAc -5'
29600 5' -63.1 NC_006151.1 + 69330 0.67 0.514052
Target:  5'- cGGGcgcgucgccgcccGCgaGCGCGGCGuAGCCC-GCGUc -3'
miRNA:   3'- aCCU-------------CGa-CGCGCCGC-UCGGGuCGCAc -5'
29600 5' -63.1 NC_006151.1 + 59366 0.67 0.505584
Target:  5'- cGGGGCgccGCGCGGCcgucgucgcGUCCAGCacGUGg -3'
miRNA:   3'- aCCUCGa--CGCGCCGcu-------CGGGUCG--CAC- -5'
29600 5' -63.1 NC_006151.1 + 130242 0.67 0.505584
Target:  5'- gGGAGCcgcagaagGCGCGGaaGAGgCCGGCGc- -3'
miRNA:   3'- aCCUCGa-------CGCGCCg-CUCgGGUCGCac -5'
29600 5' -63.1 NC_006151.1 + 141747 0.67 0.505584
Target:  5'- aGGGGC-GCGgGGCGcgcGCCCcgguGGCGUc -3'
miRNA:   3'- aCCUCGaCGCgCCGCu--CGGG----UCGCAc -5'
29600 5' -63.1 NC_006151.1 + 120278 0.67 0.496246
Target:  5'- gGGAGCUGCGUGucaaGAGCCgGGUc-- -3'
miRNA:   3'- aCCUCGACGCGCcg--CUCGGgUCGcac -5'
29600 5' -63.1 NC_006151.1 + 66788 0.67 0.496246
Target:  5'- cGGcGGCgGCgGCGGCgGGGCCCGGgGa- -3'
miRNA:   3'- aCC-UCGaCG-CGCCG-CUCGGGUCgCac -5'
29600 5' -63.1 NC_006151.1 + 119113 0.67 0.496246
Target:  5'- cGuGAGCcGCGCGGCcGGCCUcgugggGGCGcUGg -3'
miRNA:   3'- aC-CUCGaCGCGCCGcUCGGG------UCGC-AC- -5'
29600 5' -63.1 NC_006151.1 + 68464 0.68 0.441996
Target:  5'- cGGGGUccaccaGCGCGGCGGGCcacuCCAGCc-- -3'
miRNA:   3'- aCCUCGa-----CGCGCCGCUCG----GGUCGcac -5'
29600 5' -63.1 NC_006151.1 + 96807 0.68 0.44551
Target:  5'- cGGGGCgcgcggGCuuuuaGCGGCGGGCCCgccaaugggggaaagGGCGg- -3'
miRNA:   3'- aCCUCGa-----CG-----CGCCGCUCGGG---------------UCGCac -5'
29600 5' -63.1 NC_006151.1 + 5318 0.68 0.449924
Target:  5'- cUGGAGCUGCugaagccgcggccGCGGCGGagggcGCCCucuccGGCGc- -3'
miRNA:   3'- -ACCUCGACG-------------CGCCGCU-----CGGG-----UCGCac -5'
29600 5' -63.1 NC_006151.1 + 85320 0.68 0.450809
Target:  5'- cGGGcGCUacGCGCuGGaGGGCCaCAGCGUGc -3'
miRNA:   3'- aCCU-CGA--CGCG-CCgCUCGG-GUCGCAC- -5'
29600 5' -63.1 NC_006151.1 + 113428 0.68 0.450809
Target:  5'- cUGGcGCUgcgccgcuuccgGCGCGGCGuGCUCAGCu-- -3'
miRNA:   3'- -ACCuCGA------------CGCGCCGCuCGGGUCGcac -5'
29600 5' -63.1 NC_006151.1 + 10561 0.68 0.441996
Target:  5'- cGGcGCccaaugGCGCGGCcGGCUCGGCGg- -3'
miRNA:   3'- aCCuCGa-----CGCGCCGcUCGGGUCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.