miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29601 3' -59.1 NC_006151.1 + 119031 0.66 0.783052
Target:  5'- -cCGAGGCGGGCgCCaaggacggcgGcGCCGCGGccGCCUc -3'
miRNA:   3'- aaGCUCUGCCUG-GG----------C-CGGUGCU--UGGA- -5'
29601 3' -59.1 NC_006151.1 + 38209 0.66 0.783052
Target:  5'- -gCGuGGACGGgGCCCGcGCCcGCGAggccGCCUg -3'
miRNA:   3'- aaGC-UCUGCC-UGGGC-CGG-UGCU----UGGA- -5'
29601 3' -59.1 NC_006151.1 + 7168 0.66 0.783052
Target:  5'- -gCGAGGCGcauGCUCGGCaCGCGAcCCa -3'
miRNA:   3'- aaGCUCUGCc--UGGGCCG-GUGCUuGGa -5'
29601 3' -59.1 NC_006151.1 + 8241 0.66 0.783052
Target:  5'- -gCGGGGaGGGCCgGGCCgGCGcGCCg -3'
miRNA:   3'- aaGCUCUgCCUGGgCCGG-UGCuUGGa -5'
29601 3' -59.1 NC_006151.1 + 6000 0.66 0.783052
Target:  5'- -cCGAccGGgGGACCCGGCgGCcggGGACCc -3'
miRNA:   3'- aaGCU--CUgCCUGGGCCGgUG---CUUGGa -5'
29601 3' -59.1 NC_006151.1 + 99982 0.66 0.783052
Target:  5'- cUCGuGGCGG-CgCUGGCgCGCGAggACCUg -3'
miRNA:   3'- aAGCuCUGCCuG-GGCCG-GUGCU--UGGA- -5'
29601 3' -59.1 NC_006151.1 + 109549 0.66 0.783052
Target:  5'- --gGAGGCgccguGGACgUGGCC-CGAGCCg -3'
miRNA:   3'- aagCUCUG-----CCUGgGCCGGuGCUUGGa -5'
29601 3' -59.1 NC_006151.1 + 119328 0.66 0.777584
Target:  5'- -cCGcGACGGcCCCGggcaaccacgacuucGCCAUGGACCa -3'
miRNA:   3'- aaGCuCUGCCuGGGC---------------CGGUGCUUGGa -5'
29601 3' -59.1 NC_006151.1 + 118431 0.66 0.777584
Target:  5'- -aCGGGcgcggaggugugcgcGCGGcucgGCCUGGCCGCGGACg- -3'
miRNA:   3'- aaGCUC---------------UGCC----UGGGCCGGUGCUUGga -5'
29601 3' -59.1 NC_006151.1 + 123108 0.66 0.773914
Target:  5'- cUCGcGGC--GCUCGGCgGCGAGCCUg -3'
miRNA:   3'- aAGCuCUGccUGGGCCGgUGCUUGGA- -5'
29601 3' -59.1 NC_006151.1 + 102642 0.66 0.773914
Target:  5'- cUCGAGGCGGcGCUCgaGGCCGCccacGCCa -3'
miRNA:   3'- aAGCUCUGCC-UGGG--CCGGUGcu--UGGa -5'
29601 3' -59.1 NC_006151.1 + 112572 0.66 0.773914
Target:  5'- -aCGAGGaGGACUCGcCCGCGGGCUUc -3'
miRNA:   3'- aaGCUCUgCCUGGGCcGGUGCUUGGA- -5'
29601 3' -59.1 NC_006151.1 + 5929 0.66 0.764653
Target:  5'- -cCGGGGCccGGAgCCGGCC-CgGGACCg -3'
miRNA:   3'- aaGCUCUG--CCUgGGCCGGuG-CUUGGa -5'
29601 3' -59.1 NC_006151.1 + 46722 0.66 0.764653
Target:  5'- cUCGGGGgcCGGGgCCGGCCcggggucgGCGAACa- -3'
miRNA:   3'- aAGCUCU--GCCUgGGCCGG--------UGCUUGga -5'
29601 3' -59.1 NC_006151.1 + 56301 0.66 0.764653
Target:  5'- --gGAGGCGGACgCCGcgcgguGCC-UGAGCCUg -3'
miRNA:   3'- aagCUCUGCCUG-GGC------CGGuGCUUGGA- -5'
29601 3' -59.1 NC_006151.1 + 91244 0.66 0.764653
Target:  5'- cUCGGGGagcCGGGCCCcGUCGCGAggacGCCc -3'
miRNA:   3'- aAGCUCU---GCCUGGGcCGGUGCU----UGGa -5'
29601 3' -59.1 NC_006151.1 + 135766 0.66 0.764653
Target:  5'- -gUGGGACGGcGCCgGGCUggACGAgGCCUu -3'
miRNA:   3'- aaGCUCUGCC-UGGgCCGG--UGCU-UGGA- -5'
29601 3' -59.1 NC_006151.1 + 78209 0.66 0.755278
Target:  5'- cUUCGGGACGGGCUCcacgucGCuCACGGGCg- -3'
miRNA:   3'- -AAGCUCUGCCUGGGc-----CG-GUGCUUGga -5'
29601 3' -59.1 NC_006151.1 + 65178 0.66 0.755278
Target:  5'- -gCGAGGCGGAagcgCgGGuCCGCGAGCg- -3'
miRNA:   3'- aaGCUCUGCCUg---GgCC-GGUGCUUGga -5'
29601 3' -59.1 NC_006151.1 + 4946 0.66 0.755278
Target:  5'- gUCGGucGGCGGggGCCCgucGGCCAUGAGCg- -3'
miRNA:   3'- aAGCU--CUGCC--UGGG---CCGGUGCUUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.