miRNA display CGI


Results 1 - 20 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29601 5' -67.8 NC_006151.1 + 117764 0.66 0.404671
Target:  5'- -aGCGCCGGCcgagguauaggcuccGGGCGG-GGCgccacgcccGGCGGGg -3'
miRNA:   3'- gcUGCGGCCG---------------CCCGCCgCCG---------CCGCUU- -5'
29601 5' -67.8 NC_006151.1 + 90221 0.66 0.404671
Target:  5'- gGACGCCGGCcGagaucgcgucGCGGCuGGCcagcgcccagcccgcGGCGAAg -3'
miRNA:   3'- gCUGCGGCCGcC----------CGCCG-CCG---------------CCGCUU- -5'
29601 5' -67.8 NC_006151.1 + 104456 0.66 0.401485
Target:  5'- aCGACGCC-GUGGGCuucgucggGGCGGacauGGCGc- -3'
miRNA:   3'- -GCUGCGGcCGCCCG--------CCGCCg---CCGCuu -5'
29601 5' -67.8 NC_006151.1 + 33324 0.66 0.401485
Target:  5'- gGAC-CgGGacaggGGGCGGgGGCGGgGAGa -3'
miRNA:   3'- gCUGcGgCCg----CCCGCCgCCGCCgCUU- -5'
29601 5' -67.8 NC_006151.1 + 14475 0.66 0.401485
Target:  5'- gGGCggGUgGGCGGGUgGGCGGgGGuCGGGa -3'
miRNA:   3'- gCUG--CGgCCGCCCG-CCGCCgCC-GCUU- -5'
29601 5' -67.8 NC_006151.1 + 33918 0.66 0.39359
Target:  5'- -cGCGuCCGGCGGGCGGaucgaGGCccGCGc- -3'
miRNA:   3'- gcUGC-GGCCGCCCGCCg----CCGc-CGCuu -5'
29601 5' -67.8 NC_006151.1 + 78119 0.66 0.392806
Target:  5'- gGACGCCauccugcGGCGGGCcGCGGgcgccuCGGaCGAc -3'
miRNA:   3'- gCUGCGG-------CCGCCCGcCGCC------GCC-GCUu -5'
29601 5' -67.8 NC_006151.1 + 49816 0.66 0.388901
Target:  5'- aGACG--GGgGGGacgaagggacgacgaCGGCGGCGGCGGg -3'
miRNA:   3'- gCUGCggCCgCCC---------------GCCGCCGCCGCUu -5'
29601 5' -67.8 NC_006151.1 + 802 0.66 0.385796
Target:  5'- uCGuccCGCCGGCcaaucGGUGGCaGCGGgGGAg -3'
miRNA:   3'- -GCu--GCGGCCGc----CCGCCGcCGCCgCUU- -5'
29601 5' -67.8 NC_006151.1 + 46360 0.66 0.385796
Target:  5'- uCGGCGCa-GUGGauGCGGCGGaugcagaGGCGAGc -3'
miRNA:   3'- -GCUGCGgcCGCC--CGCCGCCg------CCGCUU- -5'
29601 5' -67.8 NC_006151.1 + 57223 0.66 0.385796
Target:  5'- aCGAgGCCGucGCaGGCGGCGcgcGCGGCc-- -3'
miRNA:   3'- -GCUgCGGC--CGcCCGCCGC---CGCCGcuu -5'
29601 5' -67.8 NC_006151.1 + 88902 0.66 0.385796
Target:  5'- uCGGgGUCGGCgucGGGCGaGCGgaagcgcccGCGGCGGu -3'
miRNA:   3'- -GCUgCGGCCG---CCCGC-CGC---------CGCCGCUu -5'
29601 5' -67.8 NC_006151.1 + 101921 0.66 0.385796
Target:  5'- gCGGCGCCGGCccccGUGGC--CGGCGAGc -3'
miRNA:   3'- -GCUGCGGCCGcc--CGCCGccGCCGCUU- -5'
29601 5' -67.8 NC_006151.1 + 104844 0.66 0.385796
Target:  5'- gCGGCGgaGGCGGaccaGGCcGCGGCGAc -3'
miRNA:   3'- -GCUGCggCCGCCcg--CCGcCGCCGCUu -5'
29601 5' -67.8 NC_006151.1 + 117245 0.66 0.378105
Target:  5'- -cACGUCGGCGGGCccgaggcgcgGGCcGCGcGCGGc -3'
miRNA:   3'- gcUGCGGCCGCCCG----------CCGcCGC-CGCUu -5'
29601 5' -67.8 NC_006151.1 + 30915 0.66 0.378105
Target:  5'- -aGCGCCcGCGGGCGGCccGC-GCGGAu -3'
miRNA:   3'- gcUGCGGcCGCCCGCCGc-CGcCGCUU- -5'
29601 5' -67.8 NC_006151.1 + 70943 0.66 0.378105
Target:  5'- aCGGCGCCuucucGGCGGuGCGcGUGGCcGuCGAGg -3'
miRNA:   3'- -GCUGCGG-----CCGCC-CGC-CGCCGcC-GCUU- -5'
29601 5' -67.8 NC_006151.1 + 106224 0.66 0.378105
Target:  5'- cCGACcugaUGGUGGccGCGGUGGCcGGCGAGc -3'
miRNA:   3'- -GCUGcg--GCCGCC--CGCCGCCG-CCGCUU- -5'
29601 5' -67.8 NC_006151.1 + 124063 0.66 0.370517
Target:  5'- gGACGCgCGGaCGGccguGCGcGCGGCcGCGAc -3'
miRNA:   3'- gCUGCG-GCC-GCC----CGC-CGCCGcCGCUu -5'
29601 5' -67.8 NC_006151.1 + 122940 0.66 0.370517
Target:  5'- gGACGCCGaC-GGCGGCGccGCGGgGGg -3'
miRNA:   3'- gCUGCGGCcGcCCGCCGC--CGCCgCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.