Results 121 - 140 of 352 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29602 | 3' | -65.7 | NC_006151.1 | + | 85903 | 0.67 | 0.402076 |
Target: 5'- aCGaCGCCGUGGCCGuGCaguacgaggaggggcUGgGCCuGCuGCUg -3' miRNA: 3'- -GC-GCGGUACCGGC-CG---------------ACgCGG-CG-CGA- -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 135470 | 0.67 | 0.398837 |
Target: 5'- gCGCGCCAgcguguccGcGCgGGCcagGCGgCGCGCg -3' miRNA: 3'- -GCGCGGUa-------C-CGgCCGa--CGCgGCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 52093 | 0.67 | 0.390814 |
Target: 5'- aGCGCCGUcgaGaGCa-GC-GCGCCGCGCa -3' miRNA: 3'- gCGCGGUA---C-CGgcCGaCGCGGCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 38008 | 0.67 | 0.39401 |
Target: 5'- aGCGCC-UGcugcccugcccgcuCCGGCUGC-CCGCGCc -3' miRNA: 3'- gCGCGGuACc-------------GGCCGACGcGGCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 113307 | 0.67 | 0.39401 |
Target: 5'- cCGCGCgGUGGacgccacgcuggggcCCGuGCUgGCGCUgGCGCUg -3' miRNA: 3'- -GCGCGgUACC---------------GGC-CGA-CGCGG-CGCGA- -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 64114 | 0.67 | 0.398837 |
Target: 5'- --gGUCGUGGcCCGGCgGUGgCGCGCc -3' miRNA: 3'- gcgCGGUACC-GGCCGaCGCgGCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 46541 | 0.67 | 0.398837 |
Target: 5'- cCGCGgacgaCCAgaGGCCGGCgcccagGCGCucccCGCGCa -3' miRNA: 3'- -GCGC-----GGUa-CCGGCCGa-----CGCG----GCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 58241 | 0.67 | 0.398837 |
Target: 5'- gCGCGCCGccacGcGCCGGCccgcGgGCCGCaGCa -3' miRNA: 3'- -GCGCGGUa---C-CGGCCGa---CgCGGCG-CGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 58722 | 0.67 | 0.398837 |
Target: 5'- aGCGCCcccGuGCC-GCUcGCGUCGCGCa -3' miRNA: 3'- gCGCGGua-C-CGGcCGA-CGCGGCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 96313 | 0.67 | 0.398837 |
Target: 5'- aGCGCCGacugcaGGCCGcGCgcguagaGCGCCGgGUa -3' miRNA: 3'- gCGCGGUa-----CCGGC-CGa------CGCGGCgCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 103891 | 0.67 | 0.398837 |
Target: 5'- gCGCGCCAccUGGCgcuggaGGUgGCGC-GCGCg -3' miRNA: 3'- -GCGCGGU--ACCGg-----CCGaCGCGgCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 3246 | 0.67 | 0.398837 |
Target: 5'- gGCGCgGcGGCgGaGCgggGCGCCGCGg- -3' miRNA: 3'- gCGCGgUaCCGgC-CGa--CGCGGCGCga -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 86730 | 0.67 | 0.398837 |
Target: 5'- gCGCGCCGccgcgaGGCCGGCgUGCGCgGacacaccuaccUGCa -3' miRNA: 3'- -GCGCGGUa-----CCGGCCG-ACGCGgC-----------GCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 89703 | 0.67 | 0.398837 |
Target: 5'- cCGCGuCCA-GGaacCCGGCgGCGCCGgcCGCg -3' miRNA: 3'- -GCGC-GGUaCC---GGCCGaCGCGGC--GCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 98356 | 0.67 | 0.398837 |
Target: 5'- cCGCgGgCGUGcGCgGGCUcuggGCGCgCGCGCUg -3' miRNA: 3'- -GCG-CgGUAC-CGgCCGA----CGCG-GCGCGA- -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 135166 | 0.68 | 0.359792 |
Target: 5'- gCGCgGCCcgGacgggcGCCGGCUGCcGCCGC-Cg -3' miRNA: 3'- -GCG-CGGuaC------CGGCCGACG-CGGCGcGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 140474 | 0.68 | 0.359792 |
Target: 5'- aCGCGC--UGGacucccacaaaaCCGGCUGCGaCGCGCc -3' miRNA: 3'- -GCGCGguACC------------GGCCGACGCgGCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 57735 | 0.68 | 0.359792 |
Target: 5'- gCGCGCCc--GCaCGGC-GCGCCGCaGCc -3' miRNA: 3'- -GCGCGGuacCG-GCCGaCGCGGCG-CGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 91554 | 0.68 | 0.359792 |
Target: 5'- gCGCgGCCAgcggGGCgaUGGCgGCGCgCGCGUg -3' miRNA: 3'- -GCG-CGGUa---CCG--GCCGaCGCG-GCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 96212 | 0.68 | 0.359792 |
Target: 5'- gCGuCGCCGUGGCggCGGCcgcgGCGagGCGCa -3' miRNA: 3'- -GC-GCGGUACCG--GCCGa---CGCggCGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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