miRNA display CGI


Results 141 - 160 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 113550 0.68 0.344939
Target:  5'- gCGCGCCGcgGGCCcGC-GCGCCGUcuacaaGCa -3'
miRNA:   3'- -GCGCGGUa-CCGGcCGaCGCGGCG------CGa -5'
29602 3' -65.7 NC_006151.1 + 98443 0.68 0.344939
Target:  5'- -uCGCCGagaaccUGGCCGGCcugGCGCUgugGCGCc -3'
miRNA:   3'- gcGCGGU------ACCGGCCGa--CGCGG---CGCGa -5'
29602 3' -65.7 NC_006151.1 + 84648 0.68 0.344939
Target:  5'- -aCGCCAUGGCC-GCggGCGC-GCGCc -3'
miRNA:   3'- gcGCGGUACCGGcCGa-CGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 57970 0.68 0.344939
Target:  5'- cCGUgaGCCgGUGGgCGGCgagcGCGCCGCGg- -3'
miRNA:   3'- -GCG--CGG-UACCgGCCGa---CGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 50175 0.68 0.344939
Target:  5'- aGCGC---GGCCGGCcGCGCCgGUGUUc -3'
miRNA:   3'- gCGCGguaCCGGCCGaCGCGG-CGCGA- -5'
29602 3' -65.7 NC_006151.1 + 105973 0.68 0.344939
Target:  5'- gGCGaCCGUGGCgGGCaUGCGCCuCa-- -3'
miRNA:   3'- gCGC-GGUACCGgCCG-ACGCGGcGcga -5'
29602 3' -65.7 NC_006151.1 + 96597 0.68 0.35231
Target:  5'- gGCGCCggGcGCgGGC-GCGCCGaCGUc -3'
miRNA:   3'- gCGCGGuaC-CGgCCGaCGCGGC-GCGa -5'
29602 3' -65.7 NC_006151.1 + 89954 0.68 0.35529
Target:  5'- gCGCgGCCAggaaccgGGCgCGGCUgGCgacguaggugcacguGCCGCGCa -3'
miRNA:   3'- -GCG-CGGUa------CCG-GCCGA-CG---------------CGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 56573 0.68 0.35529
Target:  5'- aCGCGCCGccgcccgacgGGCUGGUgcggacgcgccccgGCGgCGCGCUc -3'
miRNA:   3'- -GCGCGGUa---------CCGGCCGa-------------CGCgGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 91554 0.68 0.359792
Target:  5'- gCGCgGCCAgcggGGCgaUGGCgGCGCgCGCGUg -3'
miRNA:   3'- -GCG-CGGUa---CCG--GCCGaCGCG-GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 57735 0.68 0.359792
Target:  5'- gCGCGCCc--GCaCGGC-GCGCCGCaGCc -3'
miRNA:   3'- -GCGCGGuacCG-GCCGaCGCGGCG-CGa -5'
29602 3' -65.7 NC_006151.1 + 140474 0.68 0.359792
Target:  5'- aCGCGC--UGGacucccacaaaaCCGGCUGCGaCGCGCc -3'
miRNA:   3'- -GCGCGguACC------------GGCCGACGCgGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 135166 0.68 0.359792
Target:  5'- gCGCgGCCcgGacgggcGCCGGCUGCcGCCGC-Cg -3'
miRNA:   3'- -GCG-CGGuaC------CGGCCGACG-CGGCGcGa -5'
29602 3' -65.7 NC_006151.1 + 96212 0.68 0.359792
Target:  5'- gCGuCGCCGUGGCggCGGCcgcgGCGagGCGCa -3'
miRNA:   3'- -GC-GCGGUACCG--GCCGa---CGCggCGCGa -5'
29602 3' -65.7 NC_006151.1 + 36615 0.68 0.359792
Target:  5'- cCGcCGCCG-GGCCGGUcucgGCGCCcggcggcggcgGCGCc -3'
miRNA:   3'- -GC-GCGGUaCCGGCCGa---CGCGG-----------CGCGa -5'
29602 3' -65.7 NC_006151.1 + 4318 0.68 0.359792
Target:  5'- gGgGCaCGcGGCCgGGCUGCGCgGCGg- -3'
miRNA:   3'- gCgCG-GUaCCGG-CCGACGCGgCGCga -5'
29602 3' -65.7 NC_006151.1 + 81557 0.68 0.359792
Target:  5'- gGUGCaCAUGGCCGuGgUGCGgagcagggucUCGCGCg -3'
miRNA:   3'- gCGCG-GUACCGGC-CgACGC----------GGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 136077 0.68 0.359039
Target:  5'- aCGCGCCGgagcGCCcGCUGCGCUccaucgcggucggGCGCc -3'
miRNA:   3'- -GCGCGGUac--CGGcCGACGCGG-------------CGCGa -5'
29602 3' -65.7 NC_006151.1 + 111198 0.68 0.357536
Target:  5'- aGCGCCGgugacGcacgccacggcguaGCCGGCgagGCGCCGCaGCc -3'
miRNA:   3'- gCGCGGUa----C--------------CGGCCGa--CGCGGCG-CGa -5'
29602 3' -65.7 NC_006151.1 + 132139 0.68 0.337679
Target:  5'- uCGCGCCggcgGUGGUugaCGGCgcGCaGCUGCGCg -3'
miRNA:   3'- -GCGCGG----UACCG---GCCGa-CG-CGGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.