Results 61 - 80 of 352 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29602 | 3' | -65.7 | NC_006151.1 | + | 138959 | 0.72 | 0.191803 |
Target: 5'- uCGCcugguaCAUGGCCGaGCUcgcgacgcgccGCGCCGCGCUc -3' miRNA: 3'- -GCGcg----GUACCGGC-CGA-----------CGCGGCGCGA- -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 128166 | 0.72 | 0.190896 |
Target: 5'- gCGCGCgAUGGCguaguugaaccaGGCgagcGUGCCGCGCUc -3' miRNA: 3'- -GCGCGgUACCGg-----------CCGa---CGCGGCGCGA- -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 90941 | 0.72 | 0.182903 |
Target: 5'- aGCGUCAUGGCgaagGGCUcCGUCGCGCc -3' miRNA: 3'- gCGCGGUACCGg---CCGAcGCGGCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 85440 | 0.72 | 0.196393 |
Target: 5'- cCGCGCCGcGGCCGccuucCUGgGCCGCGg- -3' miRNA: 3'- -GCGCGGUaCCGGCc----GACgCGGCGCga -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 87613 | 0.72 | 0.187306 |
Target: 5'- gGcCGCCGUGGCCuGCcaGCGCgGCGCc -3' miRNA: 3'- gC-GCGGUACCGGcCGa-CGCGgCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 119966 | 0.71 | 0.199194 |
Target: 5'- gCGCGCUGUGcCCGGCgacgagcuuccugGCGCgGCGCa -3' miRNA: 3'- -GCGCGGUACcGGCCGa------------CGCGgCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 41451 | 0.71 | 0.201554 |
Target: 5'- cCGCuGCCAccgauUGGCCGGCgggacgaugacgacgGCGaCCGCGUg -3' miRNA: 3'- -GCG-CGGU-----ACCGGCCGa--------------CGC-GGCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 127435 | 0.71 | 0.225468 |
Target: 5'- gGCGCuCGUGcgcgagaGCCGGCgGCGCacgaaGCGCUg -3' miRNA: 3'- gCGCG-GUAC-------CGGCCGaCGCGg----CGCGA- -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 105362 | 0.71 | 0.215726 |
Target: 5'- gGCGaCCAUGGa-GGUgcugGCGCUGCGCa -3' miRNA: 3'- gCGC-GGUACCggCCGa---CGCGGCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 133332 | 0.71 | 0.210745 |
Target: 5'- gCGCGCCGggcGGCCGGUUcCGCgGCGg- -3' miRNA: 3'- -GCGCGGUa--CCGGCCGAcGCGgCGCga -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 106237 | 0.71 | 0.205864 |
Target: 5'- gGcCGCgGUGGCCGGCga-GCCGaCGCa -3' miRNA: 3'- gC-GCGgUACCGGCCGacgCGGC-GCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 89545 | 0.71 | 0.205864 |
Target: 5'- aGCGCCGaGGCCGGUgGagGCCGCGa- -3' miRNA: 3'- gCGCGGUaCCGGCCGaCg-CGGCGCga -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 57474 | 0.71 | 0.205864 |
Target: 5'- cCGCGCCGcggcGGCCucgcaGGCgacGCGCaCGCGCUc -3' miRNA: 3'- -GCGCGGUa---CCGG-----CCGa--CGCG-GCGCGA- -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 66563 | 0.71 | 0.220808 |
Target: 5'- gCGcCGCCGUGGacCCGGCgcuCGCgCGCGCg -3' miRNA: 3'- -GC-GCGGUACC--GGCCGac-GCG-GCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 38381 | 0.71 | 0.215726 |
Target: 5'- aGCGCCGgcGCCGGCgGCGgCGgGCg -3' miRNA: 3'- gCGCGGUacCGGCCGaCGCgGCgCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 78423 | 0.71 | 0.199194 |
Target: 5'- aGCGCCGUGGCCcacgccgucaaccGC-GUGCUGCGCg -3' miRNA: 3'- gCGCGGUACCGGc------------CGaCGCGGCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 135428 | 0.71 | 0.231277 |
Target: 5'- gCGCGCCA-GGCacuccaGGUUGCGCUG-GCa -3' miRNA: 3'- -GCGCGGUaCCGg-----CCGACGCGGCgCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 104585 | 0.71 | 0.210745 |
Target: 5'- aCGUGCUgcaGGCCGGCgGCaGCCGCGg- -3' miRNA: 3'- -GCGCGGua-CCGGCCGaCG-CGGCGCga -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 52373 | 0.71 | 0.225991 |
Target: 5'- gCGCGCCcccggGGCCcgcgggggcGGCggGCGCCGcCGCg -3' miRNA: 3'- -GCGCGGua---CCGG---------CCGa-CGCGGC-GCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 132817 | 0.71 | 0.225991 |
Target: 5'- gCGCGUCcgGGCUGGCcGC-CCGCGg- -3' miRNA: 3'- -GCGCGGuaCCGGCCGaCGcGGCGCga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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