miRNA display CGI


Results 81 - 100 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 95421 0.71 0.205864
Target:  5'- cCGUGCagagguuggaCGUGGCgagGGCgGCGCCGCGCg -3'
miRNA:   3'- -GCGCG----------GUACCGg--CCGaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 133332 0.71 0.210745
Target:  5'- gCGCGCCGggcGGCCGGUUcCGCgGCGg- -3'
miRNA:   3'- -GCGCGGUa--CCGGCCGAcGCGgCGCga -5'
29602 3' -65.7 NC_006151.1 + 52373 0.71 0.225991
Target:  5'- gCGCGCCcccggGGCCcgcgggggcGGCggGCGCCGcCGCg -3'
miRNA:   3'- -GCGCGGua---CCGG---------CCGa-CGCGGC-GCGa -5'
29602 3' -65.7 NC_006151.1 + 66563 0.71 0.220808
Target:  5'- gCGcCGCCGUGGacCCGGCgcuCGCgCGCGCg -3'
miRNA:   3'- -GC-GCGGUACC--GGCCGac-GCG-GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 104585 0.71 0.210745
Target:  5'- aCGUGCUgcaGGCCGGCgGCaGCCGCGg- -3'
miRNA:   3'- -GCGCGGua-CCGGCCGaCG-CGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 47695 0.7 0.242162
Target:  5'- aGCGCCAuuUGGCCGGUgcgGCGUCcCGg- -3'
miRNA:   3'- gCGCGGU--ACCGGCCGa--CGCGGcGCga -5'
29602 3' -65.7 NC_006151.1 + 98199 0.7 0.265208
Target:  5'- uCGCGCCGcgcggGGUcgagugcgCGGCgGCGcCCGCGCg -3'
miRNA:   3'- -GCGCGGUa----CCG--------GCCGaCGC-GGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 114903 0.7 0.27124
Target:  5'- gCGCgagGCCcgGGCgcaCGGCcccgGCGUCGCGCUc -3'
miRNA:   3'- -GCG---CGGuaCCG---GCCGa---CGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 68656 0.7 0.27124
Target:  5'- -cUGCCAcGGCCGGCgggGC-CCGCGUc -3'
miRNA:   3'- gcGCGGUaCCGGCCGa--CGcGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 55406 0.7 0.265208
Target:  5'- uGCGCgAgcaGGCCcuGC-GCGCCGCGCa -3'
miRNA:   3'- gCGCGgUa--CCGGc-CGaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 50438 0.7 0.267608
Target:  5'- gCGCGCCGgcGGCCugggcaccgcccgcgGGCgcucGCGCCaGCGCg -3'
miRNA:   3'- -GCGCGGUa-CCGG---------------CCGa---CGCGG-CGCGa -5'
29602 3' -65.7 NC_006151.1 + 136942 0.7 0.27124
Target:  5'- gGCGCCGacgGcGCCGucCUGCGCCGCcuGCUg -3'
miRNA:   3'- gCGCGGUa--C-CGGCc-GACGCGGCG--CGA- -5'
29602 3' -65.7 NC_006151.1 + 56318 0.7 0.242162
Target:  5'- gGUGCCugagccugGGCCGGUggcuggaGCGCgCGCGCg -3'
miRNA:   3'- gCGCGGua------CCGGCCGa------CGCG-GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 85328 0.7 0.236667
Target:  5'- aCGCGCUGgagGGCCacagcguGCU-CGCCGCGCUg -3'
miRNA:   3'- -GCGCGGUa--CCGGc------CGAcGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 31062 0.7 0.239951
Target:  5'- aCGCGCCAUuagagagGGCucugucugcagaaaCGGUgucuagGCGCCGCGCc -3'
miRNA:   3'- -GCGCGGUA-------CCG--------------GCCGa-----CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 95893 0.7 0.242162
Target:  5'- aGCGCCuUGaGCaCGGCcaUGaUGCCGCGCg -3'
miRNA:   3'- gCGCGGuAC-CG-GCCG--AC-GCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 72027 0.7 0.236667
Target:  5'- gGCGCCccGcGCgGGCgcccCGCCGCGCa -3'
miRNA:   3'- gCGCGGuaC-CGgCCGac--GCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 93599 0.7 0.242162
Target:  5'- uCGCGCCgAUGGCCuGCaGCagccgguCCGCGCUg -3'
miRNA:   3'- -GCGCGG-UACCGGcCGaCGc------GGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 112688 0.7 0.242162
Target:  5'- -cCGCCcUGGCUGGCggacuacgcgGCGCUGUGCg -3'
miRNA:   3'- gcGCGGuACCGGCCGa---------CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 8247 0.7 0.236667
Target:  5'- aGgGCCG-GGCCGGC-GCGCCGggaCGCc -3'
miRNA:   3'- gCgCGGUaCCGGCCGaCGCGGC---GCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.