miRNA display CGI


Results 121 - 140 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 99536 0.7 0.257528
Target:  5'- cCGCGCCcgcccacggagcacGUgGGCgCGGCgcGCGCgGCGCUg -3'
miRNA:   3'- -GCGCGG--------------UA-CCG-GCCGa-CGCGgCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 104883 0.7 0.257528
Target:  5'- aCGCGCCugcugcgcgaggugGUGGaCgCGGCgGCGgCGCGCg -3'
miRNA:   3'- -GCGCGG--------------UACC-G-GCCGaCGCgGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 57068 0.7 0.259284
Target:  5'- aGgGCaCcgGGCCGGCgccGCGCagGCGCa -3'
miRNA:   3'- gCgCG-GuaCCGGCCGa--CGCGg-CGCGa -5'
29602 3' -65.7 NC_006151.1 + 103830 0.7 0.259284
Target:  5'- gGCgGCCGUGGagaugcucgggCGGCUGCGC-GCGCa -3'
miRNA:   3'- gCG-CGGUACCg----------GCCGACGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 52893 0.69 0.298439
Target:  5'- gGCGCCGUgcgcacgaugguguaGGCCGGgaGCGUgaagaccacaaacUGCGCg -3'
miRNA:   3'- gCGCGGUA---------------CCGGCCgaCGCG-------------GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 54356 0.69 0.292576
Target:  5'- gCGCGCUacgaggacGUGGcCCGGgacuggauggcgcacCUGCGCgCGCGCg -3'
miRNA:   3'- -GCGCGG--------UACC-GGCC---------------GACGCG-GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 84614 0.69 0.283636
Target:  5'- gCGCGCCGccGCgCGGCcGcCGCgGCGCUg -3'
miRNA:   3'- -GCGCGGUacCG-GCCGaC-GCGgCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 104797 0.69 0.295822
Target:  5'- gCGCGCuCGUGcGCCgcgaccuGGCgGCGgCGCGCg -3'
miRNA:   3'- -GCGCG-GUAC-CGG-------CCGaCGCgGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 36513 0.69 0.289999
Target:  5'- --aGCCcgGGCCGGCgGCGCgGC-CUc -3'
miRNA:   3'- gcgCGGuaCCGGCCGaCGCGgCGcGA- -5'
29602 3' -65.7 NC_006151.1 + 119742 0.69 0.289999
Target:  5'- gCGcCGCCGUGGaCCGGCUcuggcggacgugGcCGgCGCGCg -3'
miRNA:   3'- -GC-GCGGUACC-GGCCGA------------C-GCgGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 56185 0.69 0.289999
Target:  5'- uCGCugGCCGUGccGCCGGUgGCGCUGcCGCa -3'
miRNA:   3'- -GCG--CGGUAC--CGGCCGaCGCGGC-GCGa -5'
29602 3' -65.7 NC_006151.1 + 97997 0.69 0.289999
Target:  5'- gGCGgCGUGGCCgcguaGGCgGCGCCG-GCc -3'
miRNA:   3'- gCGCgGUACCGG-----CCGaCGCGGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 58138 0.69 0.284267
Target:  5'- cCGCGCCGUacgcGGCCgcgugccaccGGCgguagagcgccaccaGCGCCGCGUUg -3'
miRNA:   3'- -GCGCGGUA----CCGG----------CCGa--------------CGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 81893 0.69 0.296475
Target:  5'- gGCGCCGaggcGcGCCGGUcGCGgCGCGCc -3'
miRNA:   3'- gCGCGGUa---C-CGGCCGaCGCgGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 73263 0.69 0.289999
Target:  5'- gGCGCCAggcgguuGCCGGCguugaccGUGCgGCGCa -3'
miRNA:   3'- gCGCGGUac-----CGGCCGa------CGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 90987 0.69 0.289999
Target:  5'- gGCGCCGcUGGCUGGC-GCGCUccaGCa -3'
miRNA:   3'- gCGCGGU-ACCGGCCGaCGCGGcg-CGa -5'
29602 3' -65.7 NC_006151.1 + 66518 0.69 0.289999
Target:  5'- -uCGCCG-GGCuCGcGC-GCGCCGCGCUc -3'
miRNA:   3'- gcGCGGUaCCG-GC-CGaCGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 75646 0.69 0.289999
Target:  5'- cCGuCGUCGggGGCCGGCU-CGCCGCcgaGCa -3'
miRNA:   3'- -GC-GCGGUa-CCGGCCGAcGCGGCG---CGa -5'
29602 3' -65.7 NC_006151.1 + 60925 0.69 0.296475
Target:  5'- uCGCGCCAUGGUgGGCgaguagaGCuGCCccaGCGUg -3'
miRNA:   3'- -GCGCGGUACCGgCCGa------CG-CGG---CGCGa -5'
29602 3' -65.7 NC_006151.1 + 85622 0.69 0.283636
Target:  5'- aCGCGCCGccGCCGcGCgGCGCCaGCGg- -3'
miRNA:   3'- -GCGCGGUacCGGC-CGaCGCGG-CGCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.