miRNA display CGI


Results 141 - 160 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 16983 0.69 0.303062
Target:  5'- gGCGCCA-GGagCGGUUGUGgacCCGCGCg -3'
miRNA:   3'- gCGCGGUaCCg-GCCGACGC---GGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 52893 0.69 0.298439
Target:  5'- gGCGCCGUgcgcacgaugguguaGGCCGGgaGCGUgaagaccacaaacUGCGCg -3'
miRNA:   3'- gCGCGGUA---------------CCGGCCgaCGCG-------------GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 84614 0.69 0.283636
Target:  5'- gCGCGCCGccGCgCGGCcGcCGCgGCGCUg -3'
miRNA:   3'- -GCGCGGUacCG-GCCGaC-GCGgCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 85622 0.69 0.283636
Target:  5'- aCGCGCCGccGCCGcGCgGCGCCaGCGg- -3'
miRNA:   3'- -GCGCGGUacCGGC-CGaCGCGG-CGCga -5'
29602 3' -65.7 NC_006151.1 + 73997 0.69 0.283636
Target:  5'- gGCGCCAccgaGGCCaGGagggGCGUCGUGCg -3'
miRNA:   3'- gCGCGGUa---CCGG-CCga--CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 108730 0.69 0.283636
Target:  5'- aGCGCCgaggagacgGUGGcCCGGCUGCggaugcgaGCCGUGg- -3'
miRNA:   3'- gCGCGG---------UACC-GGCCGACG--------CGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 85082 0.69 0.281748
Target:  5'- gGCGCCuguacGUGGgcaaccggcacuacUCGGCgcucgagaGCGCCGCGCUg -3'
miRNA:   3'- gCGCGG-----UACC--------------GGCCGa-------CGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 71797 0.69 0.277383
Target:  5'- cCGCaCCAgcUGGCCGaGCUcgcGCGUgGCGCUg -3'
miRNA:   3'- -GCGcGGU--ACCGGC-CGA---CGCGgCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 122474 0.69 0.275529
Target:  5'- gGCGCCGaGGCCGGggacgcgggcgagaCggcGCGCCgGCGCg -3'
miRNA:   3'- gCGCGGUaCCGGCC--------------Ga--CGCGG-CGCGa -5'
29602 3' -65.7 NC_006151.1 + 64435 0.69 0.275529
Target:  5'- gCGCGCgCGUGGCCGcCUccaccgucaggaugGCGgCGCGCg -3'
miRNA:   3'- -GCGCG-GUACCGGCcGA--------------CGCgGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 97997 0.69 0.289999
Target:  5'- gGCGgCGUGGCCgcguaGGCgGCGCCG-GCc -3'
miRNA:   3'- gCGCgGUACCGG-----CCGaCGCGGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 36513 0.69 0.289999
Target:  5'- --aGCCcgGGCCGGCgGCGCgGC-CUc -3'
miRNA:   3'- gcgCGGuaCCGGCCGaCGCGgCGcGA- -5'
29602 3' -65.7 NC_006151.1 + 5732 0.69 0.303062
Target:  5'- gGCGCCggGGUCcgaGGCcGCGCCGCcgGCc -3'
miRNA:   3'- gCGCGGuaCCGG---CCGaCGCGGCG--CGa -5'
29602 3' -65.7 NC_006151.1 + 38048 0.69 0.299096
Target:  5'- cCGCGCCccGGCCGcccucgggcccGcCUGCcucgaggaggugacgGCCGCGCUg -3'
miRNA:   3'- -GCGCGGuaCCGGC-----------C-GACG---------------CGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 97296 0.69 0.299096
Target:  5'- gGCGUguUGaGCCGGCccgucgggcagcgcGCGCUGCGCg -3'
miRNA:   3'- gCGCGguAC-CGGCCGa-------------CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 132090 0.69 0.296475
Target:  5'- gGCGCCGUccuccucgaugaGGCCGGC-GCGCacgaGCGg- -3'
miRNA:   3'- gCGCGGUA------------CCGGCCGaCGCGg---CGCga -5'
29602 3' -65.7 NC_006151.1 + 56651 0.69 0.296475
Target:  5'- cCGagGCCGUGuaccGCUGGUggacgacgGCGCCGCGCg -3'
miRNA:   3'- -GCg-CGGUAC----CGGCCGa-------CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 60925 0.69 0.296475
Target:  5'- uCGCGCCAUGGUgGGCgaguagaGCuGCCccaGCGUg -3'
miRNA:   3'- -GCGCGGUACCGgCCGa------CG-CGG---CGCGa -5'
29602 3' -65.7 NC_006151.1 + 104797 0.69 0.295822
Target:  5'- gCGCGCuCGUGcGCCgcgaccuGGCgGCGgCGCGCg -3'
miRNA:   3'- -GCGCG-GUAC-CGG-------CCGaCGCgGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 75646 0.69 0.289999
Target:  5'- cCGuCGUCGggGGCCGGCU-CGCCGCcgaGCa -3'
miRNA:   3'- -GC-GCGGUa-CCGGCCGAcGCGGCG---CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.