miRNA display CGI


Results 101 - 120 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 38840 0.7 0.247762
Target:  5'- cCGCGUCccGGCCGGCgagacccacaCGCCGCGg- -3'
miRNA:   3'- -GCGCGGuaCCGGCCGac--------GCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 89259 0.7 0.247762
Target:  5'- aGCGCCgucGUGGUCGaCgGCGCCGCGg- -3'
miRNA:   3'- gCGCGG---UACCGGCcGaCGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 56040 0.7 0.253469
Target:  5'- gCGCGUCGaGGgCGGC-GCGCUGaCGCUg -3'
miRNA:   3'- -GCGCGGUaCCgGCCGaCGCGGC-GCGA- -5'
29602 3' -65.7 NC_006151.1 + 50008 0.7 0.253469
Target:  5'- gCGCGCCGcGcGCgCGGCccGCGCgGCGCc -3'
miRNA:   3'- -GCGCGGUaC-CG-GCCGa-CGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 102925 0.7 0.253469
Target:  5'- gGcCGCCGaGGagCGGCUGCGC-GCGCUg -3'
miRNA:   3'- gC-GCGGUaCCg-GCCGACGCGgCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 94727 0.7 0.253469
Target:  5'- cCGCGCCAcGGCguccCGGCgcGCGCacuCGCGCg -3'
miRNA:   3'- -GCGCGGUaCCG----GCCGa-CGCG---GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 120806 0.7 0.253469
Target:  5'- gCGCGCCGcgcgcgagGuGCUGGaC-GCGCCGCGCg -3'
miRNA:   3'- -GCGCGGUa-------C-CGGCC-GaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 104883 0.7 0.257528
Target:  5'- aCGCGCCugcugcgcgaggugGUGGaCgCGGCgGCGgCGCGCg -3'
miRNA:   3'- -GCGCGG--------------UACC-G-GCCGaCGCgGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 99536 0.7 0.257528
Target:  5'- cCGCGCCcgcccacggagcacGUgGGCgCGGCgcGCGCgGCGCUg -3'
miRNA:   3'- -GCGCGG--------------UA-CCG-GCCGa-CGCGgCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 68831 0.7 0.259284
Target:  5'- cCGCGCC--GGCgUGuGCUcgagGCGCCGCGCg -3'
miRNA:   3'- -GCGCGGuaCCG-GC-CGA----CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 100416 0.7 0.259284
Target:  5'- gCGCGCCGacGCgGGg-GCGCUGCGCg -3'
miRNA:   3'- -GCGCGGUacCGgCCgaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 57068 0.7 0.259284
Target:  5'- aGgGCaCcgGGCCGGCgccGCGCagGCGCa -3'
miRNA:   3'- gCgCG-GuaCCGGCCGa--CGCGg-CGCGa -5'
29602 3' -65.7 NC_006151.1 + 103830 0.7 0.259284
Target:  5'- gGCgGCCGUGGagaugcucgggCGGCUGCGC-GCGCa -3'
miRNA:   3'- gCG-CGGUACCg----------GCCGACGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 59142 0.7 0.265208
Target:  5'- gGCGCCcgcgGGCgGGUccaggccgGCGUCGCGCa -3'
miRNA:   3'- gCGCGGua--CCGgCCGa-------CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 98199 0.7 0.265208
Target:  5'- uCGCGCCGcgcggGGUcgagugcgCGGCgGCGcCCGCGCg -3'
miRNA:   3'- -GCGCGGUa----CCG--------GCCGaCGC-GGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 55406 0.7 0.265208
Target:  5'- uGCGCgAgcaGGCCcuGC-GCGCCGCGCa -3'
miRNA:   3'- gCGCGgUa--CCGGc-CGaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 17473 0.7 0.265208
Target:  5'- cCGCGgCGUGuccucGUCGGCggcGCGCCGCuGCUg -3'
miRNA:   3'- -GCGCgGUAC-----CGGCCGa--CGCGGCG-CGA- -5'
29602 3' -65.7 NC_006151.1 + 73680 0.7 0.265208
Target:  5'- aGCGUguucuCGUcGGCgCGGCucUGCGCCGCGUg -3'
miRNA:   3'- gCGCG-----GUA-CCG-GCCG--ACGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 50341 0.7 0.265208
Target:  5'- gGCGCC-UGGCCgcGGCcuccCGCCGCGUc -3'
miRNA:   3'- gCGCGGuACCGG--CCGac--GCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 50438 0.7 0.267608
Target:  5'- gCGCGCCGgcGGCCugggcaccgcccgcgGGCgcucGCGCCaGCGCg -3'
miRNA:   3'- -GCGCGGUa-CCGG---------------CCGa---CGCGG-CGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.