miRNA display CGI


Results 121 - 140 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 69504 0.7 0.27124
Target:  5'- cCGCGCCGccuccuccGCC-GCcGCGCCGCGCg -3'
miRNA:   3'- -GCGCGGUac------CGGcCGaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 114903 0.7 0.27124
Target:  5'- gCGCgagGCCcgGGCgcaCGGCcccgGCGUCGCGCUc -3'
miRNA:   3'- -GCG---CGGuaCCG---GCCGa---CGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 136942 0.7 0.27124
Target:  5'- gGCGCCGacgGcGCCGucCUGCGCCGCcuGCUg -3'
miRNA:   3'- gCGCGGUa--C-CGGCc-GACGCGGCG--CGA- -5'
29602 3' -65.7 NC_006151.1 + 68656 0.7 0.27124
Target:  5'- -cUGCCAcGGCCGGCgggGC-CCGCGUc -3'
miRNA:   3'- gcGCGGUaCCGGCCGa--CGcGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 122474 0.69 0.275529
Target:  5'- gGCGCCGaGGCCGGggacgcgggcgagaCggcGCGCCgGCGCg -3'
miRNA:   3'- gCGCGGUaCCGGCC--------------Ga--CGCGG-CGCGa -5'
29602 3' -65.7 NC_006151.1 + 64435 0.69 0.275529
Target:  5'- gCGCGCgCGUGGCCGcCUccaccgucaggaugGCGgCGCGCg -3'
miRNA:   3'- -GCGCG-GUACCGGCcGA--------------CGCgGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 70876 0.69 0.277383
Target:  5'- gGCGCCuccGCCGacgagaucgcgcGCUGCGUCGUGCg -3'
miRNA:   3'- gCGCGGuacCGGC------------CGACGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 115117 0.69 0.277383
Target:  5'- gGCGCC---GCCGGCgacGCGCgCGUGCg -3'
miRNA:   3'- gCGCGGuacCGGCCGa--CGCG-GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 3613 0.69 0.277383
Target:  5'- uCGCggugGCCGUGGCCGuccccGCggaGgGCCGCGCc -3'
miRNA:   3'- -GCG----CGGUACCGGC-----CGa--CgCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 71797 0.69 0.277383
Target:  5'- cCGCaCCAgcUGGCCGaGCUcgcGCGUgGCGCUg -3'
miRNA:   3'- -GCGcGGU--ACCGGC-CGA---CGCGgCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 85082 0.69 0.281748
Target:  5'- gGCGCCuguacGUGGgcaaccggcacuacUCGGCgcucgagaGCGCCGCGCUg -3'
miRNA:   3'- gCGCGG-----UACC--------------GGCCGa-------CGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 117555 0.69 0.283005
Target:  5'- aCGCGCCGcGGCCagaagGGCuccccgcggaggaUGgGCCGCGUg -3'
miRNA:   3'- -GCGCGGUaCCGG-----CCG-------------ACgCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 108730 0.69 0.283636
Target:  5'- aGCGCCgaggagacgGUGGcCCGGCUGCggaugcgaGCCGUGg- -3'
miRNA:   3'- gCGCGG---------UACC-GGCCGACG--------CGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 73997 0.69 0.283636
Target:  5'- gGCGCCAccgaGGCCaGGagggGCGUCGUGCg -3'
miRNA:   3'- gCGCGGUa---CCGG-CCga--CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 122777 0.69 0.283636
Target:  5'- gGCuGCuCGUGGgCGGCUGCGCgGC-CUc -3'
miRNA:   3'- gCG-CG-GUACCgGCCGACGCGgCGcGA- -5'
29602 3' -65.7 NC_006151.1 + 84460 0.69 0.283636
Target:  5'- cCGCGCCAUGGaCCGcGCgugGUucgccuucgagGCCGCuGCg -3'
miRNA:   3'- -GCGCGGUACC-GGC-CGa--CG-----------CGGCG-CGa -5'
29602 3' -65.7 NC_006151.1 + 85622 0.69 0.283636
Target:  5'- aCGCGCCGccGCCGcGCgGCGCCaGCGg- -3'
miRNA:   3'- -GCGCGGUacCGGC-CGaCGCGG-CGCga -5'
29602 3' -65.7 NC_006151.1 + 84614 0.69 0.283636
Target:  5'- gCGCGCCGccGCgCGGCcGcCGCgGCGCUg -3'
miRNA:   3'- -GCGCGGUacCG-GCCGaC-GCGgCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 58138 0.69 0.284267
Target:  5'- cCGCGCCGUacgcGGCCgcgugccaccGGCgguagagcgccaccaGCGCCGCGUUg -3'
miRNA:   3'- -GCGCGGUA----CCGG----------CCGa--------------CGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 90987 0.69 0.289999
Target:  5'- gGCGCCGcUGGCUGGC-GCGCUccaGCa -3'
miRNA:   3'- gCGCGGU-ACCGGCCGaCGCGGcg-CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.