miRNA display CGI


Results 101 - 120 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 98356 0.67 0.398837
Target:  5'- cCGCgGgCGUGcGCgGGCUcuggGCGCgCGCGCUg -3'
miRNA:   3'- -GCG-CgGUAC-CGgCCGA----CGCG-GCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 135470 0.67 0.398837
Target:  5'- gCGCGCCAgcguguccGcGCgGGCcagGCGgCGCGCg -3'
miRNA:   3'- -GCGCGGUa-------C-CGgCCGa--CGCgGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 113307 0.67 0.39401
Target:  5'- cCGCGCgGUGGacgccacgcuggggcCCGuGCUgGCGCUgGCGCUg -3'
miRNA:   3'- -GCGCGgUACC---------------GGC-CGA-CGCGG-CGCGA- -5'
29602 3' -65.7 NC_006151.1 + 38008 0.67 0.39401
Target:  5'- aGCGCC-UGcugcccugcccgcuCCGGCUGC-CCGCGCc -3'
miRNA:   3'- gCGCGGuACc-------------GGCCGACGcGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 90236 0.67 0.390814
Target:  5'- uCGCGUCGcGGCUGGCcaGCGCCcagccCGCg -3'
miRNA:   3'- -GCGCGGUaCCGGCCGa-CGCGGc----GCGa -5'
29602 3' -65.7 NC_006151.1 + 71674 0.67 0.390814
Target:  5'- gCGCGCCAcgGGCC-GC-GUGCCGaGCg -3'
miRNA:   3'- -GCGCGGUa-CCGGcCGaCGCGGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 116089 0.67 0.390814
Target:  5'- cCGcCGCCGUcguccucGUCGGCgaugGCGCgGCGCUu -3'
miRNA:   3'- -GC-GCGGUAc------CGGCCGa---CGCGgCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 123068 0.67 0.390814
Target:  5'- nCGaCGCCGaGcGCCGGCgGCGCCuguaCGCg -3'
miRNA:   3'- -GC-GCGGUaC-CGGCCGaCGCGGc---GCGa -5'
29602 3' -65.7 NC_006151.1 + 52093 0.67 0.390814
Target:  5'- aGCGCCGUcgaGaGCa-GC-GCGCCGCGCa -3'
miRNA:   3'- gCGCGGUA---C-CGgcCGaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 58819 0.67 0.390017
Target:  5'- aCGCGCC--GGCCccgucgcGGCacagcaggUGCGCCaGCGCg -3'
miRNA:   3'- -GCGCGGuaCCGG-------CCG--------ACGCGG-CGCGa -5'
29602 3' -65.7 NC_006151.1 + 61785 0.67 0.388427
Target:  5'- gGCGCgAggccGGCCGGCUggcguuccagcccaGCGUgGUGCUc -3'
miRNA:   3'- gCGCGgUa---CCGGCCGA--------------CGCGgCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 137087 0.67 0.387634
Target:  5'- gGCGCCAggccuucgcggugcUGGCCggggacgccugggGGCgcgcgacgGCGCgGCGCg -3'
miRNA:   3'- gCGCGGU--------------ACCGG-------------CCGa-------CGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 54626 0.67 0.382896
Target:  5'- gCGCGCCccggggGGaagCGGCgGCGCgaGCGCUg -3'
miRNA:   3'- -GCGCGGua----CCg--GCCGaCGCGg-CGCGA- -5'
29602 3' -65.7 NC_006151.1 + 67278 0.67 0.382896
Target:  5'- gCGCGCC-UGcGCC-GCUgGUGCCGCGaCg -3'
miRNA:   3'- -GCGCGGuAC-CGGcCGA-CGCGGCGC-Ga -5'
29602 3' -65.7 NC_006151.1 + 97402 0.67 0.382896
Target:  5'- cCGUGCCGUGGaUCGcGUUGuCGaCGCGCg -3'
miRNA:   3'- -GCGCGGUACC-GGC-CGAC-GCgGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 99977 0.67 0.382896
Target:  5'- cCGCGCuCGUGGCgGcGCUG-GC-GCGCg -3'
miRNA:   3'- -GCGCG-GUACCGgC-CGACgCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 104648 0.67 0.382896
Target:  5'- aCGUGCgCGcGGCCGccgacGCgGCGCgCGCGCUc -3'
miRNA:   3'- -GCGCG-GUaCCGGC-----CGaCGCG-GCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 37149 0.67 0.380542
Target:  5'- cCGCGCCggGccgccaccgucuccGCCGGCgccCGCCGCGg- -3'
miRNA:   3'- -GCGCGGuaC--------------CGGCCGac-GCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 128239 0.67 0.375862
Target:  5'- gGCGCCAggucgccgaucaggUGGUggaagcggcacugcgCGcGCaGCGCCGCGCg -3'
miRNA:   3'- gCGCGGU--------------ACCG---------------GC-CGaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 101455 0.67 0.375086
Target:  5'- gGCGCCGUgGGCCugGGCcucuacCGCCGCGg- -3'
miRNA:   3'- gCGCGGUA-CCGG--CCGac----GCGGCGCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.