miRNA display CGI


Results 81 - 100 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 54100 0.66 0.449116
Target:  5'- gGCgGCCAU-GUCGGCUGCGaCgGCGg- -3'
miRNA:   3'- gCG-CGGUAcCGGCCGACGC-GgCGCga -5'
29602 3' -65.7 NC_006151.1 + 54356 0.69 0.292576
Target:  5'- gCGCGCUacgaggacGUGGcCCGGgacuggauggcgcacCUGCGCgCGCGCg -3'
miRNA:   3'- -GCGCGG--------UACC-GGCC---------------GACGCG-GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 54413 0.67 0.375086
Target:  5'- gGCGCCGaGGC--GCUgGCGCgGCGCUu -3'
miRNA:   3'- gCGCGGUaCCGgcCGA-CGCGgCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 54626 0.67 0.382896
Target:  5'- gCGCGCCccggggGGaagCGGCgGCGCgaGCGCUg -3'
miRNA:   3'- -GCGCGGua----CCg--GCCGaCGCGg-CGCGA- -5'
29602 3' -65.7 NC_006151.1 + 55406 0.7 0.265208
Target:  5'- uGCGCgAgcaGGCCcuGC-GCGCCGCGCa -3'
miRNA:   3'- gCGCGgUa--CCGGc-CGaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 55453 0.67 0.375086
Target:  5'- gGCGCCGccGGCCccgccggggGGCgcgcgcccgGCGCCGCGg- -3'
miRNA:   3'- gCGCGGUa-CCGG---------CCGa--------CGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 56040 0.7 0.253469
Target:  5'- gCGCGUCGaGGgCGGC-GCGCUGaCGCUg -3'
miRNA:   3'- -GCGCGGUaCCgGCCGaCGCGGC-GCGA- -5'
29602 3' -65.7 NC_006151.1 + 56185 0.69 0.289999
Target:  5'- uCGCugGCCGUGccGCCGGUgGCGCUGcCGCa -3'
miRNA:   3'- -GCG--CGGUAC--CGGCCGaCGCGGC-GCGa -5'
29602 3' -65.7 NC_006151.1 + 56318 0.7 0.242162
Target:  5'- gGUGCCugagccugGGCCGGUggcuggaGCGCgCGCGCg -3'
miRNA:   3'- gCGCGGua------CCGGCCGa------CGCG-GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 56573 0.68 0.35529
Target:  5'- aCGCGCCGccgcccgacgGGCUGGUgcggacgcgccccgGCGgCGCGCUc -3'
miRNA:   3'- -GCGCGGUa---------CCGGCCGa-------------CGCgGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 56651 0.69 0.296475
Target:  5'- cCGagGCCGUGuaccGCUGGUggacgacgGCGCCGCGCg -3'
miRNA:   3'- -GCg-CGGUAC----CGGCCGa-------CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 57068 0.7 0.259284
Target:  5'- aGgGCaCcgGGCCGGCgccGCGCagGCGCa -3'
miRNA:   3'- gCgCG-GuaCCGGCCGa--CGCGg-CGCGa -5'
29602 3' -65.7 NC_006151.1 + 57474 0.71 0.205864
Target:  5'- cCGCGCCGcggcGGCCucgcaGGCgacGCGCaCGCGCUc -3'
miRNA:   3'- -GCGCGGUa---CCGG-----CCGa--CGCG-GCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 57735 0.68 0.359792
Target:  5'- gCGCGCCc--GCaCGGC-GCGCCGCaGCc -3'
miRNA:   3'- -GCGCGGuacCG-GCCGaCGCGGCG-CGa -5'
29602 3' -65.7 NC_006151.1 + 57871 0.67 0.406966
Target:  5'- gCGCGCCcc-GCCGGCaGaCGUCGCaGCg -3'
miRNA:   3'- -GCGCGGuacCGGCCGaC-GCGGCG-CGa -5'
29602 3' -65.7 NC_006151.1 + 57970 0.68 0.344939
Target:  5'- cCGUgaGCCgGUGGgCGGCgagcGCGCCGCGg- -3'
miRNA:   3'- -GCG--CGG-UACCgGCCGa---CGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 58138 0.69 0.284267
Target:  5'- cCGCGCCGUacgcGGCCgcgugccaccGGCgguagagcgccaccaGCGCCGCGUUg -3'
miRNA:   3'- -GCGCGGUA----CCGG----------CCGa--------------CGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 58241 0.67 0.398837
Target:  5'- gCGCGCCGccacGcGCCGGCccgcGgGCCGCaGCa -3'
miRNA:   3'- -GCGCGGUa---C-CGGCCGa---CgCGGCG-CGa -5'
29602 3' -65.7 NC_006151.1 + 58673 0.72 0.196393
Target:  5'- gGcCGCCAUGaccgcGCCGuGC-GCGCCGCGCc -3'
miRNA:   3'- gC-GCGGUAC-----CGGC-CGaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 58722 0.67 0.398837
Target:  5'- aGCGCCcccGuGCC-GCUcGCGUCGCGCa -3'
miRNA:   3'- gCGCGGua-C-CGGcCGA-CGCGGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.