miRNA display CGI


Results 121 - 140 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 64381 0.66 0.457833
Target:  5'- uCGagGCCGUGGCCaGCc-CGCgGCGCa -3'
miRNA:   3'- -GCg-CGGUACCGGcCGacGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 64435 0.69 0.275529
Target:  5'- gCGCGCgCGUGGCCGcCUccaccgucaggaugGCGgCGCGCg -3'
miRNA:   3'- -GCGCG-GUACCGGCcGA--------------CGCgGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 64516 0.67 0.406966
Target:  5'- gCGCGCCGccaaaGGCC-GCcGCgGCCGCGUc -3'
miRNA:   3'- -GCGCGGUa----CCGGcCGaCG-CGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 64621 0.73 0.170238
Target:  5'- cCGCGCCGccGGCCGcGggGCGCgGCGCc -3'
miRNA:   3'- -GCGCGGUa-CCGGC-CgaCGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 64947 0.74 0.133521
Target:  5'- aGCGCC-UGGCCGcGCUGCGg-GCGCa -3'
miRNA:   3'- gCGCGGuACCGGC-CGACGCggCGCGa -5'
29602 3' -65.7 NC_006151.1 + 65812 0.73 0.1542
Target:  5'- aCGUGCCGcgguggaUGGgCGGCcGCGCCaGCGCg -3'
miRNA:   3'- -GCGCGGU-------ACCgGCCGaCGCGG-CGCGa -5'
29602 3' -65.7 NC_006151.1 + 66518 0.69 0.289999
Target:  5'- -uCGCCG-GGCuCGcGC-GCGCCGCGCUc -3'
miRNA:   3'- gcGCGGUaCCG-GC-CGaCGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 66563 0.71 0.220808
Target:  5'- gCGcCGCCGUGGacCCGGCgcuCGCgCGCGCg -3'
miRNA:   3'- -GC-GCGGUACC--GGCCGac-GCG-GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 66661 0.69 0.303062
Target:  5'- aGCGCCAUGG-CGGCggugGaCGCCaUGCg -3'
miRNA:   3'- gCGCGGUACCgGCCGa---C-GCGGcGCGa -5'
29602 3' -65.7 NC_006151.1 + 67278 0.67 0.382896
Target:  5'- gCGCGCC-UGcGCC-GCUgGUGCCGCGaCg -3'
miRNA:   3'- -GCGCGGuAC-CGGcCGA-CGCGGCGC-Ga -5'
29602 3' -65.7 NC_006151.1 + 67716 0.68 0.337679
Target:  5'- gGCGCCAcaGGCaCGGCgcgGCGCacaggcacgGCGCg -3'
miRNA:   3'- gCGCGGUa-CCG-GCCGa--CGCGg--------CGCGa -5'
29602 3' -65.7 NC_006151.1 + 67850 0.66 0.440492
Target:  5'- aGCaGCCcgGcgaGCCGGCgccgaggugGCGCgCGCGCc -3'
miRNA:   3'- gCG-CGGuaC---CGGCCGa--------CGCG-GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 68287 0.66 0.415197
Target:  5'- gGCGCCAcGG-CGGCcagGCGC-GCGCc -3'
miRNA:   3'- gCGCGGUaCCgGCCGa--CGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 68656 0.7 0.27124
Target:  5'- -cUGCCAcGGCCGGCgggGC-CCGCGUc -3'
miRNA:   3'- gcGCGGUaCCGGCCGa--CGcGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 68831 0.7 0.259284
Target:  5'- cCGCGCC--GGCgUGuGCUcgagGCGCCGCGCg -3'
miRNA:   3'- -GCGCGGuaCCG-GC-CGA----CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 69190 0.66 0.415197
Target:  5'- gCGCGCCAggGGCUcGCUccgggGC-CCGCGCc -3'
miRNA:   3'- -GCGCGGUa-CCGGcCGA-----CGcGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 69460 0.68 0.330531
Target:  5'- gCGCGCCGcggGcGCCGGCaccGuCGCCGcCGCc -3'
miRNA:   3'- -GCGCGGUa--C-CGGCCGa--C-GCGGC-GCGa -5'
29602 3' -65.7 NC_006151.1 + 69504 0.7 0.27124
Target:  5'- cCGCGCCGccuccuccGCC-GCcGCGCCGCGCg -3'
miRNA:   3'- -GCGCGGUac------CGGcCGaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 69583 0.7 0.247762
Target:  5'- cCGCGCCGcgacGaGCuCGGCcGCGCgGCGCa -3'
miRNA:   3'- -GCGCGGUa---C-CG-GCCGaCGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 69759 0.67 0.406966
Target:  5'- -cCGCCggGGCCac--GCGCCGCGCg -3'
miRNA:   3'- gcGCGGuaCCGGccgaCGCGGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.