miRNA display CGI


Results 141 - 160 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 70637 0.79 0.059719
Target:  5'- gGCGCCGUGGCCGcGCgcgagGCGCCcguccucacGCGCg -3'
miRNA:   3'- gCGCGGUACCGGC-CGa----CGCGG---------CGCGa -5'
29602 3' -65.7 NC_006151.1 + 70876 0.69 0.277383
Target:  5'- gGCGCCuccGCCGacgagaucgcgcGCUGCGUCGUGCg -3'
miRNA:   3'- gCGCGGuacCGGC------------CGACGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 71014 0.78 0.067854
Target:  5'- gGCGCCAUGcGCCGcgagcucgcggaGCUgcGCGCCGCGCg -3'
miRNA:   3'- gCGCGGUAC-CGGC------------CGA--CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 71092 0.72 0.196393
Target:  5'- gGCGCCGcgGGCgCGG--GCGCCGUGCg -3'
miRNA:   3'- gCGCGGUa-CCG-GCCgaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 71674 0.67 0.390814
Target:  5'- gCGCGCCAcgGGCC-GC-GUGCCGaGCg -3'
miRNA:   3'- -GCGCGGUa-CCGGcCGaCGCGGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 71797 0.69 0.277383
Target:  5'- cCGCaCCAgcUGGCCGaGCUcgcGCGUgGCGCUg -3'
miRNA:   3'- -GCGcGGU--ACCGGC-CGA---CGCGgCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 72027 0.7 0.236667
Target:  5'- gGCGCCccGcGCgGGCgcccCGCCGCGCa -3'
miRNA:   3'- gCGCGGuaC-CGgCCGac--GCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 72271 0.66 0.415197
Target:  5'- aGCGgCGUGGCCaGCaUGCGgUGCGg- -3'
miRNA:   3'- gCGCgGUACCGGcCG-ACGCgGCGCga -5'
29602 3' -65.7 NC_006151.1 + 72878 0.66 0.42353
Target:  5'- gGCGCCcguGUCGGCgaugaGCCGCGCc -3'
miRNA:   3'- gCGCGGuacCGGCCGacg--CGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 73101 0.71 0.220808
Target:  5'- -uCGCCGUGcaccucGCCGGCggcGCGcCCGCGCg -3'
miRNA:   3'- gcGCGGUAC------CGGCCGa--CGC-GGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 73263 0.69 0.289999
Target:  5'- gGCGCCAggcgguuGCCGGCguugaccGUGCgGCGCa -3'
miRNA:   3'- gCGCGGUac-----CGGCCGa------CGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 73315 0.73 0.147242
Target:  5'- cCGCGUccagCAUGGgCGGg-GCGCCGCGCg -3'
miRNA:   3'- -GCGCG----GUACCgGCCgaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 73680 0.7 0.265208
Target:  5'- aGCGUguucuCGUcGGCgCGGCucUGCGCCGCGUg -3'
miRNA:   3'- gCGCG-----GUA-CCG-GCCG--ACGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 73997 0.69 0.283636
Target:  5'- gGCGCCAccgaGGCCaGGagggGCGUCGUGCg -3'
miRNA:   3'- gCGCGGUa---CCGG-CCga--CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 75115 0.72 0.181167
Target:  5'- gGCGCCAgcagcuggucggcGGCCGGCgGCGCggcccaGCGCg -3'
miRNA:   3'- gCGCGGUa------------CCGGCCGaCGCGg-----CGCGa -5'
29602 3' -65.7 NC_006151.1 + 75646 0.69 0.289999
Target:  5'- cCGuCGUCGggGGCCGGCU-CGCCGCcgaGCa -3'
miRNA:   3'- -GC-GCGGUa-CCGGCCGAcGCGGCG---CGa -5'
29602 3' -65.7 NC_006151.1 + 76116 0.78 0.069604
Target:  5'- aCGCGCagcaucUGGUCGGCcGUGCCGCGCUc -3'
miRNA:   3'- -GCGCGgu----ACCGGCCGaCGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 76329 0.66 0.415197
Target:  5'- aCGgGCUGgucGGCCGGgUGCggcccGUCGCGCg -3'
miRNA:   3'- -GCgCGGUa--CCGGCCgACG-----CGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 76891 0.68 0.323496
Target:  5'- aGCGCC---GCCuGCUGCGCCG-GCg -3'
miRNA:   3'- gCGCGGuacCGGcCGACGCGGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 76941 0.68 0.337679
Target:  5'- cCGCGCCAcgaGGaCGGC-GCagacgGCCGCGCg -3'
miRNA:   3'- -GCGCGGUa--CCgGCCGaCG-----CGGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.