miRNA display CGI


Results 61 - 80 of 352 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 119966 0.71 0.199194
Target:  5'- gCGCGCUGUGcCCGGCgacgagcuuccugGCGCgGCGCa -3'
miRNA:   3'- -GCGCGGUACcGGCCGa------------CGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 119807 0.66 0.466639
Target:  5'- -aCGCCGgcuuCCGGCacGCGCUGCGCg -3'
miRNA:   3'- gcGCGGUacc-GGCCGa-CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 119742 0.69 0.289999
Target:  5'- gCGcCGCCGUGGaCCGGCUcuggcggacgugGcCGgCGCGCg -3'
miRNA:   3'- -GC-GCGGUACC-GGCCGA------------C-GCgGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 119475 0.68 0.337679
Target:  5'- uGCGCUacGUGGCCGGCaGCcUCGaCGCc -3'
miRNA:   3'- gCGCGG--UACCGGCCGaCGcGGC-GCGa -5'
29602 3' -65.7 NC_006151.1 + 119039 0.76 0.104224
Target:  5'- gGCGCCAaGGaCGGCgGCGCCGCGg- -3'
miRNA:   3'- gCGCGGUaCCgGCCGaCGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 118321 0.66 0.431962
Target:  5'- gCGUGCCc---CCGaGCaGCGCCGCGCc -3'
miRNA:   3'- -GCGCGGuaccGGC-CGaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 118186 0.7 0.247762
Target:  5'- -cCGUCGaGGCCGGCUuCGCCGgGCa -3'
miRNA:   3'- gcGCGGUaCCGGCCGAcGCGGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 118036 0.67 0.406148
Target:  5'- cCGCGgccaagaCCGUGaCCGuGC-GCGCCGCGCc -3'
miRNA:   3'- -GCGC-------GGUACcGGC-CGaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 117555 0.69 0.283005
Target:  5'- aCGCGCCGcGGCCagaagGGCuccccgcggaggaUGgGCCGCGUg -3'
miRNA:   3'- -GCGCGGUaCCGG-----CCG-------------ACgCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 117234 0.66 0.449116
Target:  5'- aCGCGCgCGUccacgucggcgGGCCcgaGGCgcGgGCCGCGCg -3'
miRNA:   3'- -GCGCG-GUA-----------CCGG---CCGa-CgCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 116089 0.67 0.390814
Target:  5'- cCGcCGCCGUcguccucGUCGGCgaugGCGCgGCGCUu -3'
miRNA:   3'- -GC-GCGGUAc------CGGCCGa---CGCGgCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 115154 0.68 0.323496
Target:  5'- aCGCGCCcgaaGG-CGGCgaaGCCGCGCg -3'
miRNA:   3'- -GCGCGGua--CCgGCCGacgCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 115117 0.69 0.277383
Target:  5'- gGCGCC---GCCGGCgacGCGCgCGUGCg -3'
miRNA:   3'- gCGCGGuacCGGCCGa--CGCG-GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 114903 0.7 0.27124
Target:  5'- gCGCgagGCCcgGGCgcaCGGCcccgGCGUCGCGCUc -3'
miRNA:   3'- -GCG---CGGuaCCG---GCCGa---CGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 114140 0.66 0.449116
Target:  5'- cCGCcgaGCCGcGGCUcgGGCgcaGCGaCCGCGCg -3'
miRNA:   3'- -GCG---CGGUaCCGG--CCGa--CGC-GGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 113885 0.67 0.406966
Target:  5'- gGCGCaagucGUCGGCcGCGCgGCGCa -3'
miRNA:   3'- gCGCGguac-CGGCCGaCGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 113633 0.68 0.337679
Target:  5'- nCGUGCUcuuUGaGCgCGGCgacGCGCUGCGCa -3'
miRNA:   3'- -GCGCGGu--AC-CG-GCCGa--CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 113602 0.8 0.051199
Target:  5'- uGCGCCGUGGCCGaGCgccagGCGgacCCGCGCg -3'
miRNA:   3'- gCGCGGUACCGGC-CGa----CGC---GGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 113550 0.68 0.344939
Target:  5'- gCGCGCCGcgGGCCcGC-GCGCCGUcuacaaGCa -3'
miRNA:   3'- -GCGCGGUa-CCGGcCGaCGCGGCG------CGa -5'
29602 3' -65.7 NC_006151.1 + 113415 0.74 0.140228
Target:  5'- gCGCGCgCAcUGGCUGGCgcUGCGCCGCu-- -3'
miRNA:   3'- -GCGCG-GU-ACCGGCCG--ACGCGGCGcga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.