miRNA display CGI


Results 121 - 140 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 100441 0.66 0.415197
Target:  5'- gGCGUgAUGGCgcagacgaCGGagGCGCUGCGCg -3'
miRNA:   3'- gCGCGgUACCG--------GCCgaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 100416 0.7 0.259284
Target:  5'- gCGCGCCGacGCgGGg-GCGCUGCGCg -3'
miRNA:   3'- -GCGCGGUacCGgCCgaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 100228 0.76 0.094289
Target:  5'- gGCGCCGUGGCCGaGCgcguggugGCGCUcgaGCGCc -3'
miRNA:   3'- gCGCGGUACCGGC-CGa-------CGCGG---CGCGa -5'
29602 3' -65.7 NC_006151.1 + 100083 0.67 0.367384
Target:  5'- gGUGCUcgagGcGCCGGCgccgGCGCCGCccucGCUg -3'
miRNA:   3'- gCGCGGua--C-CGGCCGa---CGCGGCG----CGA- -5'
29602 3' -65.7 NC_006151.1 + 99977 0.67 0.382896
Target:  5'- cCGCGCuCGUGGCgGcGCUG-GC-GCGCg -3'
miRNA:   3'- -GCGCG-GUACCGgC-CGACgCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 99607 0.84 0.024146
Target:  5'- cCGCGCCG-GGCUGGCgcacaGCGCCGCGCg -3'
miRNA:   3'- -GCGCGGUaCCGGCCGa----CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 99536 0.7 0.257528
Target:  5'- cCGCGCCcgcccacggagcacGUgGGCgCGGCgcGCGCgGCGCUg -3'
miRNA:   3'- -GCGCGG--------------UA-CCG-GCCGa-CGCGgCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 99343 0.73 0.161066
Target:  5'- gCGCGCCGUcGGCugcacggcggucguCGGCgGCGUCGUGCa -3'
miRNA:   3'- -GCGCGGUA-CCG--------------GCCGaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 99075 0.75 0.118028
Target:  5'- uGCGCCcgGGCaccguGGCgcgGCGCCuGCGCa -3'
miRNA:   3'- gCGCGGuaCCGg----CCGa--CGCGG-CGCGa -5'
29602 3' -65.7 NC_006151.1 + 98832 0.67 0.403702
Target:  5'- uGCGCCAgaugcagaacgagGGCCugaagccGCUGaCGCgCGCGCUc -3'
miRNA:   3'- gCGCGGUa------------CCGGc------CGAC-GCG-GCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 98693 0.67 0.375086
Target:  5'- cCGCGUCGUGcccCCGGagcagacgGCGCgCGCGCUc -3'
miRNA:   3'- -GCGCGGUACc--GGCCga------CGCG-GCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 98443 0.68 0.344939
Target:  5'- -uCGCCGagaaccUGGCCGGCcugGCGCUgugGCGCc -3'
miRNA:   3'- gcGCGGU------ACCGGCCGa--CGCGG---CGCGa -5'
29602 3' -65.7 NC_006151.1 + 98356 0.67 0.398837
Target:  5'- cCGCgGgCGUGcGCgGGCUcuggGCGCgCGCGCUg -3'
miRNA:   3'- -GCG-CgGUAC-CGgCCGA----CGCG-GCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 98199 0.7 0.265208
Target:  5'- uCGCGCCGcgcggGGUcgagugcgCGGCgGCGcCCGCGCg -3'
miRNA:   3'- -GCGCGGUa----CCG--------GCCGaCGC-GGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 98099 0.66 0.431962
Target:  5'- aGCGUCAccUGGCguauaaGGC-GCGCgCGCGCc -3'
miRNA:   3'- gCGCGGU--ACCGg-----CCGaCGCG-GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 97997 0.69 0.289999
Target:  5'- gGCGgCGUGGCCgcguaGGCgGCGCCG-GCc -3'
miRNA:   3'- gCGCgGUACCGG-----CCGaCGCGGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 97500 0.67 0.375086
Target:  5'- aGCGCCucgcGG-CGGUgGCGCUGCGUg -3'
miRNA:   3'- gCGCGGua--CCgGCCGaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 97402 0.67 0.382896
Target:  5'- cCGUGCCGUGGaUCGcGUUGuCGaCGCGCg -3'
miRNA:   3'- -GCGCGGUACC-GGC-CGAC-GCgGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 97296 0.69 0.299096
Target:  5'- gGCGUguUGaGCCGGCccgucgggcagcgcGCGCUGCGCg -3'
miRNA:   3'- gCGCGguAC-CGGCCGa-------------CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 96862 0.67 0.375086
Target:  5'- cCGCGCCc--GCCGG--GCGCgGCGCg -3'
miRNA:   3'- -GCGCGGuacCGGCCgaCGCGgCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.