miRNA display CGI


Results 101 - 120 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 78280 0.66 0.42353
Target:  5'- gGCaCCu--GCCGaGCUGCuacGCCGCGCUg -3'
miRNA:   3'- gCGcGGuacCGGC-CGACG---CGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 40087 0.66 0.42353
Target:  5'- gGCGCCggGGCCGGCcccgGCGaggaCGgGg- -3'
miRNA:   3'- gCGCGGuaCCGGCCGa---CGCg---GCgCga -5'
29602 3' -65.7 NC_006151.1 + 39137 0.66 0.42353
Target:  5'- cCGCGCCc-GGCCugGGacccGCGCCGCGg- -3'
miRNA:   3'- -GCGCGGuaCCGG--CCga--CGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 20114 0.66 0.42353
Target:  5'- gGCGCCccggcgacggGGCUggggGGCggGCGCCGCGg- -3'
miRNA:   3'- gCGCGGua--------CCGG----CCGa-CGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 122280 0.66 0.42353
Target:  5'- gGCGCCu--GCuCGGCUGCG-UGUGCg -3'
miRNA:   3'- gCGCGGuacCG-GCCGACGCgGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 83454 0.66 0.431962
Target:  5'- gGcCGCCA-GGCCcacgaaGGC--CGCCGCGCUg -3'
miRNA:   3'- gC-GCGGUaCCGG------CCGacGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 88535 0.66 0.431962
Target:  5'- aGCGCa--GGCgcacGCUGCGCCGCGg- -3'
miRNA:   3'- gCGCGguaCCGgc--CGACGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 139641 0.66 0.445655
Target:  5'- gGCGCCGgcgcgggggucgcGGCgGGC-GCGCCGCcCg -3'
miRNA:   3'- gCGCGGUa------------CCGgCCGaCGCGGCGcGa -5'
29602 3' -65.7 NC_006151.1 + 60625 0.66 0.440492
Target:  5'- cCGcCGCCGUcgucggggcggGGCuccCGGCccGCGCCGCGUc -3'
miRNA:   3'- -GC-GCGGUA-----------CCG---GCCGa-CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 92671 0.66 0.440492
Target:  5'- uGCuGCCGgcGGCCGgggacgcgcGCU-CGCCGCGCg -3'
miRNA:   3'- gCG-CGGUa-CCGGC---------CGAcGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 16893 0.66 0.440492
Target:  5'- uCGCGuCCGUuGCCGcGCccgccccgGCGCCgGCGCa -3'
miRNA:   3'- -GCGC-GGUAcCGGC-CGa-------CGCGG-CGCGa -5'
29602 3' -65.7 NC_006151.1 + 2171 0.66 0.440492
Target:  5'- -uCGCCggGGCCGGCcccgGCGCC-CGa- -3'
miRNA:   3'- gcGCGGuaCCGGCCGa---CGCGGcGCga -5'
29602 3' -65.7 NC_006151.1 + 101279 0.66 0.440492
Target:  5'- -uCGUCuacgagGGCgCgGGCgGCGCCGCGCUg -3'
miRNA:   3'- gcGCGGua----CCG-G-CCGaCGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 35216 0.66 0.440492
Target:  5'- gCGCGCCcauUGGCCcgGGCgagccgagaugGcCGCCGCGg- -3'
miRNA:   3'- -GCGCGGu--ACCGG--CCGa----------C-GCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 30915 0.66 0.440492
Target:  5'- aGCGCCc--GCgGGCgGC-CCGCGCg -3'
miRNA:   3'- gCGCGGuacCGgCCGaCGcGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 20214 0.66 0.440492
Target:  5'- aGCGCCG-GGCCGcGCagGCGaCCcCGCc -3'
miRNA:   3'- gCGCGGUaCCGGC-CGa-CGC-GGcGCGa -5'
29602 3' -65.7 NC_006151.1 + 1833 0.66 0.440492
Target:  5'- aGCGCCGccgGGCCgaggggaccgaGGCcGcCGCCGCGg- -3'
miRNA:   3'- gCGCGGUa--CCGG-----------CCGaC-GCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 95268 0.66 0.440492
Target:  5'- uGCGCauCAUGGCguugacgaagaCGGCgGCGaCGCGCg -3'
miRNA:   3'- gCGCG--GUACCG-----------GCCGaCGCgGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 67850 0.66 0.440492
Target:  5'- aGCaGCCcgGcgaGCCGGCgccgaggugGCGCgCGCGCc -3'
miRNA:   3'- gCG-CGGuaC---CGGCCGa--------CGCG-GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 131124 0.66 0.431962
Target:  5'- gGCGCgGgaGGCC-GCgGCGCCGCGg- -3'
miRNA:   3'- gCGCGgUa-CCGGcCGaCGCGGCGCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.