miRNA display CGI


Results 121 - 140 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 136756 0.66 0.415197
Target:  5'- gCGCGCCucgccCCGGCcauggGCGCCG-GCUa -3'
miRNA:   3'- -GCGCGGuacc-GGCCGa----CGCGGCgCGA- -5'
29602 3' -65.7 NC_006151.1 + 102395 0.66 0.415197
Target:  5'- gGCGC--UGGUcgCGGCgcGCGUCGCGCg -3'
miRNA:   3'- gCGCGguACCG--GCCGa-CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 82000 0.66 0.42353
Target:  5'- gGCgGCCA-GGgCGGCcgcgUGCGCCGCcgacaGCUg -3'
miRNA:   3'- gCG-CGGUaCCgGCCG----ACGCGGCG-----CGA- -5'
29602 3' -65.7 NC_006151.1 + 82994 0.66 0.42353
Target:  5'- gCGcCGCCAcGGCC-GCgGCGCagaCGCGCg -3'
miRNA:   3'- -GC-GCGGUaCCGGcCGaCGCG---GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 126410 0.66 0.42353
Target:  5'- cCGCGUCggGGCgaUGGCcacGCGCCGCcgGCa -3'
miRNA:   3'- -GCGCGGuaCCG--GCCGa--CGCGGCG--CGa -5'
29602 3' -65.7 NC_006151.1 + 101279 0.66 0.440492
Target:  5'- -uCGUCuacgagGGCgCgGGCgGCGCCGCGCUg -3'
miRNA:   3'- gcGCGGua----CCG-G-CCGaCGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 35216 0.66 0.440492
Target:  5'- gCGCGCCcauUGGCCcgGGCgagccgagaugGcCGCCGCGg- -3'
miRNA:   3'- -GCGCGGu--ACCGG--CCGa----------C-GCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 30915 0.66 0.440492
Target:  5'- aGCGCCc--GCgGGCgGC-CCGCGCg -3'
miRNA:   3'- gCGCGGuacCGgCCGaCGcGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 20214 0.66 0.440492
Target:  5'- aGCGCCG-GGCCGcGCagGCGaCCcCGCc -3'
miRNA:   3'- gCGCGGUaCCGGC-CGa-CGC-GGcGCGa -5'
29602 3' -65.7 NC_006151.1 + 1833 0.66 0.440492
Target:  5'- aGCGCCGccgGGCCgaggggaccgaGGCcGcCGCCGCGg- -3'
miRNA:   3'- gCGCGGUa--CCGG-----------CCGaC-GCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 95268 0.66 0.440492
Target:  5'- uGCGCauCAUGGCguugacgaagaCGGCgGCGaCGCGCg -3'
miRNA:   3'- gCGCG--GUACCG-----------GCCGaCGCgGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 67850 0.66 0.440492
Target:  5'- aGCaGCCcgGcgaGCCGGCgccgaggugGCGCgCGCGCc -3'
miRNA:   3'- gCG-CGGuaC---CGGCCGa--------CGCG-GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 131124 0.66 0.431962
Target:  5'- gGCGCgGgaGGCC-GCgGCGCCGCGg- -3'
miRNA:   3'- gCGCGgUa-CCGGcCGaCGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 88535 0.66 0.431962
Target:  5'- aGCGCa--GGCgcacGCUGCGCCGCGg- -3'
miRNA:   3'- gCGCGguaCCGgc--CGACGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 83454 0.66 0.431962
Target:  5'- gGcCGCCA-GGCCcacgaaGGC--CGCCGCGCUg -3'
miRNA:   3'- gC-GCGGUaCCGG------CCGacGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 132333 0.66 0.431962
Target:  5'- gCGCGCCGUGGCCacguacaGGUgcaggaagagccaggGgGCCagGCGCg -3'
miRNA:   3'- -GCGCGGUACCGG-------CCGa--------------CgCGG--CGCGa -5'
29602 3' -65.7 NC_006151.1 + 118321 0.66 0.431962
Target:  5'- gCGUGCCc---CCGaGCaGCGCCGCGCc -3'
miRNA:   3'- -GCGCGGuaccGGC-CGaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 98099 0.66 0.431962
Target:  5'- aGCGUCAccUGGCguauaaGGC-GCGCgCGCGCc -3'
miRNA:   3'- gCGCGGU--ACCGg-----CCGaCGCG-GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 2375 0.66 0.431962
Target:  5'- gCGCGCaacucGGCCGGCaggcccucgGgGCCGCGg- -3'
miRNA:   3'- -GCGCGgua--CCGGCCGa--------CgCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 96707 0.66 0.428577
Target:  5'- cCGCGCCggGGgCGGCggcggacgaggagGCGgCGgGCg -3'
miRNA:   3'- -GCGCGGuaCCgGCCGa------------CGCgGCgCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.