miRNA display CGI


Results 61 - 80 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 78280 0.66 0.42353
Target:  5'- gGCaCCu--GCCGaGCUGCuacGCCGCGCUg -3'
miRNA:   3'- gCGcGGuacCGGC-CGACG---CGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 82000 0.66 0.42353
Target:  5'- gGCgGCCA-GGgCGGCcgcgUGCGCCGCcgacaGCUg -3'
miRNA:   3'- gCG-CGGUaCCgGCCG----ACGCGGCG-----CGA- -5'
29602 3' -65.7 NC_006151.1 + 82994 0.66 0.42353
Target:  5'- gCGcCGCCAcGGCC-GCgGCGCagaCGCGCg -3'
miRNA:   3'- -GC-GCGGUaCCGGcCGaCGCG---GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 126410 0.66 0.42353
Target:  5'- cCGCGUCggGGCgaUGGCcacGCGCCGCcgGCa -3'
miRNA:   3'- -GCGCGGuaCCG--GCCGa--CGCGGCG--CGa -5'
29602 3' -65.7 NC_006151.1 + 100864 0.66 0.418518
Target:  5'- uGCGCgAcugGGCCgccgugaaccuggagGuGCUGCGCCGCGg- -3'
miRNA:   3'- gCGCGgUa--CCGG---------------C-CGACGCGGCGCga -5'
29602 3' -65.7 NC_006151.1 + 72271 0.66 0.415197
Target:  5'- aGCGgCGUGGCCaGCaUGCGgUGCGg- -3'
miRNA:   3'- gCGCgGUACCGGcCG-ACGCgGCGCga -5'
29602 3' -65.7 NC_006151.1 + 69190 0.66 0.415197
Target:  5'- gCGCGCCAggGGCUcGCUccgggGC-CCGCGCc -3'
miRNA:   3'- -GCGCGGUa-CCGGcCGA-----CGcGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 6236 0.66 0.415197
Target:  5'- gGCGCCggGaGCCcuGGCUGCcGCCGuCGg- -3'
miRNA:   3'- gCGCGGuaC-CGG--CCGACG-CGGC-GCga -5'
29602 3' -65.7 NC_006151.1 + 68287 0.66 0.415197
Target:  5'- gGCGCCAcGG-CGGCcagGCGC-GCGCc -3'
miRNA:   3'- gCGCGGUaCCgGCCGa--CGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 76329 0.66 0.415197
Target:  5'- aCGgGCUGgucGGCCGGgUGCggcccGUCGCGCg -3'
miRNA:   3'- -GCgCGGUa--CCGGCCgACG-----CGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 100441 0.66 0.415197
Target:  5'- gGCGUgAUGGCgcagacgaCGGagGCGCUGCGCg -3'
miRNA:   3'- gCGCGgUACCG--------GCCgaCGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 101744 0.66 0.415197
Target:  5'- uGcCGCCGgacCCGGCgGcCGCCGCGCc -3'
miRNA:   3'- gC-GCGGUaccGGCCGaC-GCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 102395 0.66 0.415197
Target:  5'- gGCGC--UGGUcgCGGCgcGCGUCGCGCg -3'
miRNA:   3'- gCGCGguACCG--GCCGa-CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 136756 0.66 0.415197
Target:  5'- gCGCGCCucgccCCGGCcauggGCGCCG-GCUa -3'
miRNA:   3'- -GCGCGGuacc-GGCCGa----CGCGGCgCGA- -5'
29602 3' -65.7 NC_006151.1 + 141841 0.66 0.415197
Target:  5'- cCGCGCuCGacGCgaggGGCUcGCGCCGCGCc -3'
miRNA:   3'- -GCGCG-GUacCGg---CCGA-CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 107591 0.66 0.415197
Target:  5'- cCGcCGCCAagcUGGCCccGCcgGCGCCGcCGCc -3'
miRNA:   3'- -GC-GCGGU---ACCGGc-CGa-CGCGGC-GCGa -5'
29602 3' -65.7 NC_006151.1 + 2461 0.66 0.414369
Target:  5'- gGCGCCGagcccccagcgguUGGCCGcGCgGUGCCcgaaggcgGCGCc -3'
miRNA:   3'- gCGCGGU-------------ACCGGC-CGaCGCGG--------CGCGa -5'
29602 3' -65.7 NC_006151.1 + 64516 0.67 0.406966
Target:  5'- gCGCGCCGccaaaGGCC-GCcGCgGCCGCGUc -3'
miRNA:   3'- -GCGCGGUa----CCGGcCGaCG-CGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 57871 0.67 0.406966
Target:  5'- gCGCGCCcc-GCCGGCaGaCGUCGCaGCg -3'
miRNA:   3'- -GCGCGGuacCGGCCGaC-GCGGCG-CGa -5'
29602 3' -65.7 NC_006151.1 + 39967 0.67 0.406966
Target:  5'- gGCGCCGUcGCCGccGCggGCGCCcCGCc -3'
miRNA:   3'- gCGCGGUAcCGGC--CGa-CGCGGcGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.