Results 81 - 100 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29602 | 5' | -56.9 | NC_006151.1 | + | 46634 | 0.7 | 0.635941 |
Target: 5'- ----uGCGACGCGGcCGGACgGGCg-- -3' miRNA: 3'- ucuagUGCUGCGCC-GCCUGgUCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 64027 | 0.7 | 0.635941 |
Target: 5'- cGAUCGCGuCGCGaucGCaGACCAGCa-- -3' miRNA: 3'- uCUAGUGCuGCGC---CGcCUGGUCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 21501 | 0.7 | 0.645142 |
Target: 5'- gGGggCGCGGgcgucacCGgGGCGGGCUcgGGCUUCg -3' miRNA: 3'- -UCuaGUGCU-------GCgCCGCCUGG--UCGAAG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 106342 | 0.7 | 0.656375 |
Target: 5'- cGcgCugGACGCGGUGGACaC-GCUg- -3' miRNA: 3'- uCuaGugCUGCGCCGCCUG-GuCGAag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 111662 | 0.7 | 0.656375 |
Target: 5'- uGAUCGCGgccagggggGCGuCGGCGGGCCGGa--- -3' miRNA: 3'- uCUAGUGC---------UGC-GCCGCCUGGUCgaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 63413 | 0.7 | 0.666567 |
Target: 5'- cGggCACGGCGCaGGCGGG-CGGCacgUCg -3' miRNA: 3'- uCuaGUGCUGCG-CCGCCUgGUCGa--AG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 141632 | 0.7 | 0.666567 |
Target: 5'- cGGGUCgcugccgcgGCGGCGCGGCGgGGCCccgcgGGCUc- -3' miRNA: 3'- -UCUAG---------UGCUGCGCCGC-CUGG-----UCGAag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 67741 | 0.71 | 0.574811 |
Target: 5'- cAGG-CACGGCGCGGCggccccgucggGGugCGGCgUCg -3' miRNA: 3'- -UCUaGUGCUGCGCCG-----------CCugGUCGaAG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 58497 | 0.71 | 0.574811 |
Target: 5'- uGGAUgAUGccCGCGcGCGGGCCGGCcUCg -3' miRNA: 3'- -UCUAgUGCu-GCGC-CGCCUGGUCGaAG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 17924 | 0.71 | 0.584938 |
Target: 5'- uGAUCGCGACgcccaucaggcaGCGGCGGcgucuCCGGCg-- -3' miRNA: 3'- uCUAGUGCUG------------CGCCGCCu----GGUCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 17400 | 0.71 | 0.595099 |
Target: 5'- cGGggCGCGuggcGCGCGGCagcaGGGCCAGCg-- -3' miRNA: 3'- -UCuaGUGC----UGCGCCG----CCUGGUCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 71768 | 0.71 | 0.614474 |
Target: 5'- uGGUCcuGCGGCaGCGGCGGcgggggcugccgcACCAGCUg- -3' miRNA: 3'- uCUAG--UGCUG-CGCCGCC-------------UGGUCGAag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 51949 | 0.71 | 0.615495 |
Target: 5'- uGGUCGCGcagcaccacGCGCGGCGuGuCCAGCg-- -3' miRNA: 3'- uCUAGUGC---------UGCGCCGC-CuGGUCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 67972 | 0.71 | 0.615495 |
Target: 5'- aGGAcCACGcaguCGCGGCGGcccGCCGGCg-- -3' miRNA: 3'- -UCUaGUGCu---GCGCCGCC---UGGUCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 27433 | 0.72 | 0.505399 |
Target: 5'- cGGUCcaugGGCGCGGCGGACgCGGUgggUCg -3' miRNA: 3'- uCUAGug--CUGCGCCGCCUG-GUCGa--AG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 89479 | 0.72 | 0.52491 |
Target: 5'- -cGUCACGuGCGCGGCGGcgaGCCGGUa-- -3' miRNA: 3'- ucUAGUGC-UGCGCCGCC---UGGUCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 104568 | 0.72 | 0.515117 |
Target: 5'- gGGcgCGCGGCGC-GCGGACguGCUg- -3' miRNA: 3'- -UCuaGUGCUGCGcCGCCUGguCGAag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 21436 | 0.72 | 0.52491 |
Target: 5'- gGGGUCGCGGCGUGGgGuGGCCcccGGCggCg -3' miRNA: 3'- -UCUAGUGCUGCGCCgC-CUGG---UCGaaG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 10196 | 0.72 | 0.544699 |
Target: 5'- cGGUCGCGGCGCgGGCGG--CGGCUg- -3' miRNA: 3'- uCUAGUGCUGCG-CCGCCugGUCGAag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 130953 | 0.73 | 0.458089 |
Target: 5'- gGGGUCGCGcggGCGCGG-GGGCCGGUa-- -3' miRNA: 3'- -UCUAGUGC---UGCGCCgCCUGGUCGaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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