miRNA display CGI


Results 61 - 80 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 5' -56.9 NC_006151.1 + 17819 0.68 0.755979
Target:  5'- ---cCugGGCGCGGCGGgGCgGGCg-- -3'
miRNA:   3'- ucuaGugCUGCGCCGCC-UGgUCGaag -5'
29602 5' -56.9 NC_006151.1 + 130372 0.68 0.774884
Target:  5'- cGcgCGCGcCGCGGCGuccagcgcgaaGGCCAGCgccUCg -3'
miRNA:   3'- uCuaGUGCuGCGCCGC-----------CUGGUCGa--AG- -5'
29602 5' -56.9 NC_006151.1 + 104894 0.68 0.774884
Target:  5'- ---gCGCGAgGUGGUGGACgCGGCggCg -3'
miRNA:   3'- ucuaGUGCUgCGCCGCCUG-GUCGaaG- -5'
29602 5' -56.9 NC_006151.1 + 102400 0.68 0.774884
Target:  5'- uGGUCGCGGCGCGcgucGCGcGGCCcGCg-- -3'
miRNA:   3'- uCUAGUGCUGCGC----CGC-CUGGuCGaag -5'
29602 5' -56.9 NC_006151.1 + 29585 0.68 0.764545
Target:  5'- cGGAUCGCGGCggcugcggccgcgGCGGCGGG--GGCUg- -3'
miRNA:   3'- -UCUAGUGCUG-------------CGCCGCCUggUCGAag -5'
29602 5' -56.9 NC_006151.1 + 133626 0.68 0.764545
Target:  5'- gGGGUCGCGGCggccgggGCGGUGGuCCGGgUg- -3'
miRNA:   3'- -UCUAGUGCUG-------CGCCGCCuGGUCgAag -5'
29602 5' -56.9 NC_006151.1 + 68465 0.68 0.765491
Target:  5'- gGGGUcCACcaGCGCGGCGGGCCA-CUcCa -3'
miRNA:   3'- -UCUA-GUGc-UGCGCCGCCUGGUcGAaG- -5'
29602 5' -56.9 NC_006151.1 + 75454 0.67 0.82826
Target:  5'- uGGcgCGCGuaGCGguCGGCGG-CCGGCUUg -3'
miRNA:   3'- -UCuaGUGC--UGC--GCCGCCuGGUCGAAg -5'
29602 5' -56.9 NC_006151.1 + 50471 0.67 0.82826
Target:  5'- --cUCGCGccaGCGCGGCGcGACCgAGCc-- -3'
miRNA:   3'- ucuAGUGC---UGCGCCGC-CUGG-UCGaag -5'
29602 5' -56.9 NC_006151.1 + 98210 0.67 0.82826
Target:  5'- gGGGUCGaguGCGCGGCGGcGCCcGCg-- -3'
miRNA:   3'- -UCUAGUgc-UGCGCCGCC-UGGuCGaag -5'
29602 5' -56.9 NC_006151.1 + 126278 0.67 0.811093
Target:  5'- cGAagGCGACGUGGaCGaGGCCAaGCUg- -3'
miRNA:   3'- uCUagUGCUGCGCC-GC-CUGGU-CGAag -5'
29602 5' -56.9 NC_006151.1 + 118159 0.67 0.811093
Target:  5'- cGGUgGCGccgcugguGCGCGGCcugaccgucGaGGCCGGCUUCg -3'
miRNA:   3'- uCUAgUGC--------UGCGCCG---------C-CUGGUCGAAG- -5'
29602 5' -56.9 NC_006151.1 + 54822 0.67 0.811093
Target:  5'- uGGcgCGCGACGCGcucaCGGGCgAGCg-- -3'
miRNA:   3'- -UCuaGUGCUGCGCc---GCCUGgUCGaag -5'
29602 5' -56.9 NC_006151.1 + 84749 0.67 0.827418
Target:  5'- gAGGagACGGCGCgcgccgccgaggaGGCGGACgCGGCg-- -3'
miRNA:   3'- -UCUagUGCUGCG-------------CCGCCUG-GUCGaag -5'
29602 5' -56.9 NC_006151.1 + 61761 0.67 0.801371
Target:  5'- cGGUCGCGGgggccguggugcUGCGGCGcgaggccGGCCGGCUg- -3'
miRNA:   3'- uCUAGUGCU------------GCGCCGC-------CUGGUCGAag -5'
29602 5' -56.9 NC_006151.1 + 122163 0.67 0.80846
Target:  5'- cGcgCACGAUcgGCGGCGGGCUcguggugccgccggAGCUg- -3'
miRNA:   3'- uCuaGUGCUG--CGCCGCCUGG--------------UCGAag -5'
29602 5' -56.9 NC_006151.1 + 66345 0.67 0.793278
Target:  5'- cGA-CGCGACGCGGCgcuacuacgcGGACCucaAGCg-- -3'
miRNA:   3'- uCUaGUGCUGCGCCG----------CCUGG---UCGaag -5'
29602 5' -56.9 NC_006151.1 + 26346 0.67 0.793278
Target:  5'- --cUCACGggGCgGCGGCGGGCC-GCgUCg -3'
miRNA:   3'- ucuAGUGC--UG-CGCCGCCUGGuCGaAG- -5'
29602 5' -56.9 NC_006151.1 + 4155 0.67 0.793278
Target:  5'- gGGAUCGCGuCGCGgaGCGcGAgCAGCg-- -3'
miRNA:   3'- -UCUAGUGCuGCGC--CGC-CUgGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 78172 0.67 0.792372
Target:  5'- uGGUCGaggccguguccgcCGuCGCGGCGGACCc-CUUCu -3'
miRNA:   3'- uCUAGU-------------GCuGCGCCGCCUGGucGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.