miRNA display CGI


Results 81 - 100 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 5' -56.9 NC_006151.1 + 4155 0.67 0.793278
Target:  5'- gGGAUCGCGuCGCGgaGCGcGAgCAGCg-- -3'
miRNA:   3'- -UCUAGUGCuGCGC--CGC-CUgGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 26346 0.67 0.793278
Target:  5'- --cUCACGggGCgGCGGCGGGCC-GCgUCg -3'
miRNA:   3'- ucuAGUGC--UG-CGCCGCCUGGuCGaAG- -5'
29602 5' -56.9 NC_006151.1 + 66345 0.67 0.793278
Target:  5'- cGA-CGCGACGCGGCgcuacuacgcGGACCucaAGCg-- -3'
miRNA:   3'- uCUaGUGCUGCGCCG----------CCUGG---UCGaag -5'
29602 5' -56.9 NC_006151.1 + 91731 0.67 0.793278
Target:  5'- cGAacaGCGAcauCGCGGCGGGCgAGCg-- -3'
miRNA:   3'- uCUag-UGCU---GCGCCGCCUGgUCGaag -5'
29602 5' -56.9 NC_006151.1 + 61761 0.67 0.801371
Target:  5'- cGGUCGCGGgggccguggugcUGCGGCGcgaggccGGCCGGCUg- -3'
miRNA:   3'- uCUAGUGCU------------GCGCCGC-------CUGGUCGAag -5'
29602 5' -56.9 NC_006151.1 + 122163 0.67 0.80846
Target:  5'- cGcgCACGAUcgGCGGCGGGCUcguggugccgccggAGCUg- -3'
miRNA:   3'- uCuaGUGCUG--CGCCGCCUGG--------------UCGAag -5'
29602 5' -56.9 NC_006151.1 + 54822 0.67 0.811093
Target:  5'- uGGcgCGCGACGCGcucaCGGGCgAGCg-- -3'
miRNA:   3'- -UCuaGUGCUGCGCc---GCCUGgUCGaag -5'
29602 5' -56.9 NC_006151.1 + 100799 0.66 0.860398
Target:  5'- ---cCACGAgGUGGCGGGCgaCGGCg-- -3'
miRNA:   3'- ucuaGUGCUgCGCCGCCUG--GUCGaag -5'
29602 5' -56.9 NC_006151.1 + 72253 0.66 0.860398
Target:  5'- ---cCGCGGCcgccgacgccgaGCGGCGuGGCCAGCa-- -3'
miRNA:   3'- ucuaGUGCUG------------CGCCGC-CUGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 127828 0.66 0.860398
Target:  5'- cGGuUCACGuACGUGGCGGcguCgCGGCUg- -3'
miRNA:   3'- -UCuAGUGC-UGCGCCGCCu--G-GUCGAag -5'
29602 5' -56.9 NC_006151.1 + 129929 0.66 0.867935
Target:  5'- gAGAgCGCGAUGCugcccaGCGGcACCAGCg-- -3'
miRNA:   3'- -UCUaGUGCUGCGc-----CGCC-UGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 120718 0.66 0.872356
Target:  5'- gGGAUCACGAUGCagucgaagcgcccGCGGGacCCGGCcgcgUCa -3'
miRNA:   3'- -UCUAGUGCUGCGc------------CGCCU--GGUCGa---AG- -5'
29602 5' -56.9 NC_006151.1 + 107173 0.66 0.858866
Target:  5'- gAGAUCcccuuccuggaGACGaCGGaGGACCAGCUg- -3'
miRNA:   3'- -UCUAGug---------CUGC-GCCgCCUGGUCGAag -5'
29602 5' -56.9 NC_006151.1 + 5333 0.66 0.844714
Target:  5'- ---cCGCGGCcGCGGCGGAgggcgcccucuCCGGCg-- -3'
miRNA:   3'- ucuaGUGCUG-CGCCGCCU-----------GGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 128616 0.66 0.83658
Target:  5'- ---cCGCGGCGUgcgccccagguGGCGGACCAcGCgcgcgUCg -3'
miRNA:   3'- ucuaGUGCUGCG-----------CCGCCUGGU-CGa----AG- -5'
29602 5' -56.9 NC_006151.1 + 96213 0.66 0.83658
Target:  5'- -cGUCGcCGugGCGGCGGcCgCGGCg-- -3'
miRNA:   3'- ucUAGU-GCugCGCCGCCuG-GUCGaag -5'
29602 5' -56.9 NC_006151.1 + 85964 0.66 0.83658
Target:  5'- ---gCGCaACGCGGCGGACaAGCgccUCg -3'
miRNA:   3'- ucuaGUGcUGCGCCGCCUGgUCGa--AG- -5'
29602 5' -56.9 NC_006151.1 + 57512 0.66 0.83658
Target:  5'- cGGcCGCGGCgGCGGCGGccgccuCCGGCg-- -3'
miRNA:   3'- uCUaGUGCUG-CGCCGCCu-----GGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 40545 0.66 0.860398
Target:  5'- gAGGUgGCGGCgGUGGUGGAagCGGCggCg -3'
miRNA:   3'- -UCUAgUGCUG-CGCCGCCUg-GUCGaaG- -5'
29602 5' -56.9 NC_006151.1 + 54063 0.66 0.83658
Target:  5'- uGGcgUugGugGCGcGCGGACCcucuGCggCg -3'
miRNA:   3'- -UCuaGugCugCGC-CGCCUGGu---CGaaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.