Results 81 - 100 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29602 | 5' | -56.9 | NC_006151.1 | + | 91731 | 0.67 | 0.793278 |
Target: 5'- cGAacaGCGAcauCGCGGCGGGCgAGCg-- -3' miRNA: 3'- uCUag-UGCU---GCGCCGCCUGgUCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 66345 | 0.67 | 0.793278 |
Target: 5'- cGA-CGCGACGCGGCgcuacuacgcGGACCucaAGCg-- -3' miRNA: 3'- uCUaGUGCUGCGCCG----------CCUGG---UCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 26346 | 0.67 | 0.793278 |
Target: 5'- --cUCACGggGCgGCGGCGGGCC-GCgUCg -3' miRNA: 3'- ucuAGUGC--UG-CGCCGCCUGGuCGaAG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 4155 | 0.67 | 0.793278 |
Target: 5'- gGGAUCGCGuCGCGgaGCGcGAgCAGCg-- -3' miRNA: 3'- -UCUAGUGCuGCGC--CGC-CUgGUCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 78172 | 0.67 | 0.792372 |
Target: 5'- uGGUCGaggccguguccgcCGuCGCGGCGGACCc-CUUCu -3' miRNA: 3'- uCUAGU-------------GCuGCGCCGCCUGGucGAAG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 132376 | 0.68 | 0.787818 |
Target: 5'- aGGcgCGCGACGUcGCGGuaguagcgcccgcgcACCAGCUg- -3' miRNA: 3'- -UCuaGUGCUGCGcCGCC---------------UGGUCGAag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 63271 | 0.68 | 0.784149 |
Target: 5'- -cGUCACGACGCGGUugcuGGAgaaUCGGCa-- -3' miRNA: 3'- ucUAGUGCUGCGCCG----CCU---GGUCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 118159 | 0.67 | 0.811093 |
Target: 5'- cGGUgGCGccgcugguGCGCGGCcugaccgucGaGGCCGGCUUCg -3' miRNA: 3'- uCUAgUGC--------UGCGCCG---------C-CUGGUCGAAG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 126278 | 0.67 | 0.811093 |
Target: 5'- cGAagGCGACGUGGaCGaGGCCAaGCUg- -3' miRNA: 3'- uCUagUGCUGCGCC-GC-CUGGU-CGAag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 96905 | 0.67 | 0.814581 |
Target: 5'- -uGUCugGGCGgGGCGGgacaagccgggacggGCCGGgaUCg -3' miRNA: 3'- ucUAGugCUGCgCCGCC---------------UGGUCgaAG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 54063 | 0.66 | 0.83658 |
Target: 5'- uGGcgUugGugGCGcGCGGACCcucuGCggCg -3' miRNA: 3'- -UCuaGugCugCGC-CGCCUGGu---CGaaG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 98210 | 0.67 | 0.82826 |
Target: 5'- gGGGUCGaguGCGCGGCGGcGCCcGCg-- -3' miRNA: 3'- -UCUAGUgc-UGCGCCGCC-UGGuCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 75454 | 0.67 | 0.82826 |
Target: 5'- uGGcgCGCGuaGCGguCGGCGG-CCGGCUUg -3' miRNA: 3'- -UCuaGUGC--UGC--GCCGCCuGGUCGAAg -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 50471 | 0.67 | 0.82826 |
Target: 5'- --cUCGCGccaGCGCGGCGcGACCgAGCc-- -3' miRNA: 3'- ucuAGUGC---UGCGCCGC-CUGG-UCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 84749 | 0.67 | 0.827418 |
Target: 5'- gAGGagACGGCGCgcgccgccgaggaGGCGGACgCGGCg-- -3' miRNA: 3'- -UCUagUGCUGCG-------------CCGCCUG-GUCGaag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 136833 | 0.67 | 0.819762 |
Target: 5'- cGGGcUCuGCGACGCGGCc-GCCGGCcUCg -3' miRNA: 3'- -UCU-AG-UGCUGCGCCGccUGGUCGaAG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 14565 | 0.67 | 0.819762 |
Target: 5'- ---cCACaggGACGCGaGCgGGACCGGCUggUCg -3' miRNA: 3'- ucuaGUG---CUGCGC-CG-CCUGGUCGA--AG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 132116 | 0.67 | 0.819762 |
Target: 5'- cGcgCACGA-GCGGCaGGcCCAGCUc- -3' miRNA: 3'- uCuaGUGCUgCGCCG-CCuGGUCGAag -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 113443 | 0.67 | 0.819762 |
Target: 5'- --uUC-CGGCGCGGCGuGCuCAGCUacUCg -3' miRNA: 3'- ucuAGuGCUGCGCCGCcUG-GUCGA--AG- -5' |
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29602 | 5' | -56.9 | NC_006151.1 | + | 71837 | 0.67 | 0.817179 |
Target: 5'- uGGAUCACGGCGuUGGCGuaccguccugcgcccCCAGCgUCa -3' miRNA: 3'- -UCUAGUGCUGC-GCCGCcu-------------GGUCGaAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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